View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3178_low_15 (Length: 244)
Name: NF3178_low_15
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_low_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 28437125 - 28437340
Alignment:
| Q |
21 |
tgcatcaaatcatatcatcattcaattactcctatcttccctttccataaagaaaaaccatctttttctctttttctctctgaaaattcattcaatggtg |
120 |
Q |
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| T |
28437125 |
tgcatcaaatcatatcatcattcaactactcctatcttccctttccataaagaaaaaccatctt--------tttctctctgaaaattcattcaatggtg |
28437216 |
T |
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| Q |
121 |
gcaccaaatcacaaaaacacacaagatcatgaaaaccaacaaggttcttcatcagaaaccaagataacagatcaacaaaaagttgtaataaaatgtccaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28437217 |
gcaccaaatcacaaaaacacacaagatcatgaaaaccaacaaggttcttcatcagaaaccaagataacagatcaacaaaaagttgtaataaaatgtccaa |
28437316 |
T |
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| Q |
221 |
gatgtgattctccaaacacaaaat |
244 |
Q |
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|||||||||||||||||||||||| |
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| T |
28437317 |
gatgtgattctccaaacacaaaat |
28437340 |
T |
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