View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3178_low_16 (Length: 243)
Name: NF3178_low_16
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_low_16 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 7523440 - 7523216
Alignment:
| Q |
19 |
tttacactgtcaaagtgaatgcaccttttggtgttgatgttagtgtttcacctagcaaacttgttttcagtagtgaaaacaaaacgcaagcttttgaggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7523440 |
tttacactgtcaaagtgaatgcaccttttggtgttgatgttagtgtttcacctagcaaacttgttttcagtagtgaaaacaaaacgcaagcttttgaggt |
7523341 |
T |
|
| Q |
119 |
tactttcactaggattggatatggtggttctcagagttttgggtcacttgaatggagtgatggaagtcacattgtgaggagcccaattgctgctagatgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7523340 |
tactttcactaggattggatatggtggttctcagagttttgggtcacttgaatggagtgatggaagtcacattgtgaggagcccaattgctgctagatgg |
7523241 |
T |
|
| Q |
219 |
agtaatggattttcctcagcatctt |
243 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
7523240 |
agtaatggattttcctcagcatctt |
7523216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University