View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3178_low_18 (Length: 238)
Name: NF3178_low_18
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 32247828 - 32247620
Alignment:
| Q |
18 |
aaaatcatcagagtttgttgaaaaatcgacaagaccttcctcaatgagtgctaagtcatgcaacaatgtctcataatgttcttttacttcagttgatgat |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32247828 |
aaaatcatcagaatttgttgaaaaatcgacaagaccttcctcaatgagtgctaagtcatgcaacaatgtctcataatgttcttttacttcggttgatgat |
32247729 |
T |
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| Q |
118 |
cgaccgcaaacaagagcaatattttcccatcgaccttcttgtacttcttcaatatattcaaagagaatggtctcaaagattttattttcatcccatgtcc |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32247728 |
cgaccgcaaacaagaccaatattttcccatcgaccttcttgtacttcttcaagatattcaaagagaatggtctcaaagattttattttcatcccatgtcc |
32247629 |
T |
|
| Q |
218 |
actcctttg |
226 |
Q |
| |
|
||||||||| |
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|
| T |
32247628 |
actcctttg |
32247620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 32235425 - 32235217
Alignment:
| Q |
18 |
aaaatcatcagagtttgttgaaaaatcgacaagaccttcctcaatgagtgctaagtcatgcaacaatgtctcataatgttcttttacttcagttgatgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32235425 |
aaaatcatcagagtttgttgaaaaatcgacaagaccttcctcaatgagtgctaagtcatgcaacaatgtctcataatgttcttttacttcggttgatgat |
32235326 |
T |
|
| Q |
118 |
cgaccgcaaacaagagcaatattttcccatcgaccttcttgtacttcttcaatatattcaaagagaatggtctcaaagattttattttcatcccatgtcc |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32235325 |
cgaccgcaaacaagaccaatattttcccatcgaccttcttgtacttcttcaagatattcaaagagaattgtctcaaagattttattttcatcccatgtcc |
32235226 |
T |
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| Q |
218 |
actcctttg |
226 |
Q |
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| ||||||| |
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| T |
32235225 |
attcctttg |
32235217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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