View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3178_low_20 (Length: 238)
Name: NF3178_low_20
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 47902343 - 47902127
Alignment:
| Q |
15 |
cagagaagatgtggaatacctttcaagcaattggaaacatagcttttgcatatgcttttagtaacgtaattgttgagatacaagtaagtaattataagaa |
114 |
Q |
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| T |
47902343 |
cagagaagatgtggaatacctttcaagcaattggaaacatagcttttgcatatgcttttagtaacgtaattgttgagatacaagtaagtaattttaagca |
47902244 |
T |
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| Q |
115 |
aaacaagtgcttaattcagttcatagtcatgct------------taataccacaatttgtcaagtttctcatttattttgttatataagcaataaaata |
202 |
Q |
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| T |
47902243 |
aatcaagtgcttaattcagttcatagtcatgcttaattcagtgcttaataccacaatttgtcaagtttctcatttattttgttatataagcaataaaata |
47902144 |
T |
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| Q |
203 |
attatgtttactggtct |
219 |
Q |
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| T |
47902143 |
attatgtttactggtct |
47902127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 47908914 - 47908826
Alignment:
| Q |
18 |
agaagatgtggaatacctttcaagcaattggaaacatagcttttgcatatgcttttagtaacgtaattgttgagatacaagtaagtaat |
106 |
Q |
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| T |
47908914 |
agaagttgtggaataccttccaagcaattggaaacatagcttttgcttatgctttcagtatggtaattgctgagatacaggcaagtaat |
47908826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 47923361 - 47923289
Alignment:
| Q |
24 |
tgtggaatacctttcaagcaattggaaacatagcttttgcatatgcttttagtaacgtaattgttgagataca |
96 |
Q |
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| T |
47923361 |
tgtggaatacctttcaagcaataggaaacatagcttttgcatattcttttagcactgtaattgctgaaataca |
47923289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 47917017 - 47916967
Alignment:
| Q |
17 |
gagaagatgtggaatacctttcaagcaattggaaacatagcttttgcatat |
67 |
Q |
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| T |
47917017 |
gagaagctgtggaataccttccaggcaattggaaacatagcatttgcatat |
47916967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 47897706 - 47897672
Alignment:
| Q |
22 |
gatgtggaatacctttcaagcaattggaaacatag |
56 |
Q |
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| T |
47897706 |
gatgtggaataccttccaagcaattggaaacatag |
47897672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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