View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3178_low_21 (Length: 204)
Name: NF3178_low_21
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 2559041 - 2558868
Alignment:
| Q |
12 |
cagagagaacgtattaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctca |
111 |
Q |
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| T |
2559041 |
cagagagaacgtattaagctttgttaactatttgtctaatgaccttccttaatcgattatatattccttctatttcaattattacttcacttatccctca |
2558942 |
T |
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| Q |
112 |
tcatatgtttccatgtctagaaaacgacatgaaattcattttacctgtcgacttccgttgctgagcaaaataga |
185 |
Q |
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| T |
2558941 |
tcatatgtttccatgtctggaaaacgacatgaaattcattttacctgtcgacttccgatgttgagcaaaataga |
2558868 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 25642353 - 25642261
Alignment:
| Q |
24 |
attaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctcatcata |
116 |
Q |
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| T |
25642353 |
attaagccttgtgaactatttgtctaatatcattccttaatcgattatatcctccttttatttcaattattactcaacatatccctcaacata |
25642261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 18997740 - 18997671
Alignment:
| Q |
24 |
attaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattat |
93 |
Q |
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| T |
18997740 |
attaagcttcatgaactatttgtctaatatccttcctgaatcgattatatactccttttatttcaattat |
18997671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 10169270 - 10169172
Alignment:
| Q |
31 |
tttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctcatcatatgtttccatgtct |
129 |
Q |
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| T |
10169270 |
tttgataactaatcgtctaatgaccttcctagatcaattatatactcctcctatttcaattattccttcaactgtcccttattgtatgttttcatgtct |
10169172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 29277840 - 29277893
Alignment:
| Q |
31 |
tttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctat |
84 |
Q |
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| T |
29277840 |
tttgttaactaattatctaatgcccttccttaatcgagtatatacttcatctat |
29277893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 5334873 - 5334909
Alignment:
| Q |
103 |
tatccctcatcatatgtttccatgtctagaaaacgac |
139 |
Q |
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| T |
5334873 |
tatccctcattatacgtttccatgtctagaaaacgac |
5334909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 35246938 - 35246872
Alignment:
| Q |
27 |
aagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattat |
93 |
Q |
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| T |
35246938 |
aagcttcgttaactaattatttaatttccttccttaatcgattatatatttctcctatttcagttat |
35246872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 34049464 - 34049411
Alignment:
| Q |
85 |
ttcaattattacttcacttatccctcatcatatgtttccatgtctagaaaacga |
138 |
Q |
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| T |
34049464 |
ttcaaatataacctcacttatccctcatcgtatgtttccatgtctagtaaacga |
34049411 |
T |
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