View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3178_low_3 (Length: 470)
Name: NF3178_low_3
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 39620407 - 39620214
Alignment:
| Q |
14 |
ttctggtacatattttttgttttcttcacctccctatactgtacctactacggcatgatgacaatggctataaccccaaaccaaaccattgtctctttcc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39620407 |
ttctggtacatattttttgttttcttcacctccctatactgtacctactacggcatgatgacaatagctataaccccaaaccaaaccattgtctctttcc |
39620308 |
T |
|
| Q |
114 |
ttacccgtccgtcctatgtattatggaatcttttctcaggaactgttgtcccaccaccagtaagtttttacttcctttaatgataagtgataag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39620307 |
ttacccgtccgtcctatgtattatggaatcttttctcaggaactgttgtcccaccaccagtaagtttttacttcctttaatgataagtgataag |
39620214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 272 - 448
Target Start/End: Complemental strand, 39620149 - 39619973
Alignment:
| Q |
272 |
gatatgtgataaaagagaattccaatatggtggagatggttttaccgggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39620149 |
gatatgtgataaaagagaattccaatatggtggagatggttttactgggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
39620050 |
T |
|
| Q |
372 |
gtataaaagatcatattgagtataatggaaaaggtgtttcagtagaagactttttggaaaattactttggtttccag |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39620049 |
gtataaaagatcatattgagtataatggaaaaagtgtttcagtagaagactttttggaaaattactttggtttccag |
39619973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 39340842 - 39340895
Alignment:
| Q |
318 |
gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
371 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
39340842 |
gggcaaatccaatggcatggagtttgtatggattggcggcttcacaatatggag |
39340895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 39355650 - 39355703
Alignment:
| Q |
318 |
gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
371 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
39355650 |
gggcaaatccaatagcgtggagtttgtatggattggtggcttcacaatatggag |
39355703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 39545260 - 39545207
Alignment:
| Q |
318 |
gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
371 |
Q |
| |
|
|||| |||||| |||| ||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
39545260 |
gggccaatccagtggcttggagtttgtatggattggtggcttcacaatatggag |
39545207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 39562092 - 39562039
Alignment:
| Q |
318 |
gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
371 |
Q |
| |
|
||||||||||||| || ||||||||| |||||||||||| |||||||| ||||| |
|
|
| T |
39562092 |
gggcaaatccaatagcgtggagtttgtatggattggtggtttcacaatatggag |
39562039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 39368395 - 39368448
Alignment:
| Q |
318 |
gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
371 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||||| ||||||||| ||||| |
|
|
| T |
39368395 |
gggcaaatccagtggcatggagtttatacggattggtgacttcacaatatggag |
39368448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 39535898 - 39535845
Alignment:
| Q |
318 |
gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
371 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||||| ||||||||| ||||| |
|
|
| T |
39535898 |
gggcaaatccagtggcatggagtttatacggattggtgacttcacaatatggag |
39535845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University