View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3178_low_4 (Length: 462)
Name: NF3178_low_4
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 34130733 - 34130355
Alignment:
| Q |
1 |
tatatacactaaacatgtagaacaaacaagtcaatggtgcaactgatttttgtgcacaagcatatttgcattgattatataatttacaaggtgatcattt |
100 |
Q |
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| T |
34130733 |
tatatacactaaacatgtagaacaaacaagtcaatggtgcaactgatttttgtgcgcaagcatatttgcattgattatataatttacaaggtgatcattt |
34130634 |
T |
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| Q |
101 |
atgcaaaatgtgtgcataaagttcttaacaccacctctccaaataatga----------------------atattacatcattctttgtggcaccctag |
178 |
Q |
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| T |
34130633 |
atgcaaaatgtgtgcataaagttcttaacaccacctctccaaataatgacatcacattaaaccaaaattgaatattacatcattctttgtggcaccctag |
34130534 |
T |
|
| Q |
179 |
ccttgaagtaaataaaattgtcaatttctaattttcttctgtctcttttattggcagtagtttcaggctcctcatcctcttcaactttctgctcagttta |
278 |
Q |
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| T |
34130533 |
ccttgaagtaaataaaattgtcaatttctaattttcttctgtctcttttattggcagtagtttcaggctcctcatcctcttcaactttctgctcagttta |
34130434 |
T |
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| Q |
279 |
taataaagccatctgcagggaccaaagaaatga-ttataattagaaaatataatagtaatgatgttaatggttttcagc |
356 |
Q |
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| T |
34130433 |
taataaagccatctgcagggaccaaagaaatgagttataattagaaaatataacagtaatgatgttaatgggtttcagc |
34130355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 34129759 - 34129708
Alignment:
| Q |
392 |
ttcaaaactttaccctaactaaggcatcagaagctttatttcaggtaaaaac |
443 |
Q |
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| T |
34129759 |
ttcaaaacattaccctaactaaggcatcagaagctttatttcaggtaaaaac |
34129708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 393
Target Start/End: Complemental strand, 34129813 - 34129778
Alignment:
| Q |
358 |
gaacctcctctaggaaaaccctcactccaaaatatt |
393 |
Q |
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| T |
34129813 |
gaacctcctctaggaaaaccctcactccaaaatatt |
34129778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 48559585 - 48559469
Alignment:
| Q |
193 |
aaattgtcaatttctaattttcttct-gtctcttttattggcagtagtttcaggctcctcatcctcttcaactttctgctcagtttataataaagccatc |
291 |
Q |
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| T |
48559585 |
aaattatcaatttctagttttcttcttgcctcttttcttcatactagtttcaggcccctcagcctcttcagctttctgctcagcttctaataaagccagc |
48559486 |
T |
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| Q |
292 |
tgcagggaccaaagaaa |
308 |
Q |
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| T |
48559485 |
tgcagtgacaaaagaaa |
48559469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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