View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3178_low_5 (Length: 448)

Name: NF3178_low_5
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3178_low_5
NF3178_low_5
[»] chr4 (4 HSPs)
chr4 (3-97)||(12105370-12105464)
chr4 (3-83)||(46644132-46644212)
chr4 (1-92)||(32179257-32179343)
chr4 (35-93)||(1494015-1494073)
[»] chr3 (2 HSPs)
chr3 (3-90)||(1326449-1326536)
chr3 (93-157)||(33709572-33709637)
[»] chr2 (3 HSPs)
chr2 (5-92)||(5568357-5568446)
chr2 (1-94)||(6408320-6408415)
chr2 (35-92)||(27008466-27008523)
[»] chr7 (5 HSPs)
chr7 (91-162)||(1829921-1829992)
chr7 (216-366)||(1842287-1842427)
chr7 (33-94)||(12489525-12489586)
chr7 (98-162)||(1840398-1840462)
chr7 (108-160)||(24870113-24870165)
[»] chr5 (3 HSPs)
chr5 (1-93)||(18598932-18599023)
chr5 (93-161)||(29006218-29006284)
chr5 (35-92)||(22362729-22362786)
[»] chr6 (1 HSPs)
chr6 (5-93)||(23267272-23267358)
[»] chr1 (3 HSPs)
chr1 (1-55)||(9380057-9380111)
chr1 (33-95)||(45883891-45883954)
chr1 (35-95)||(29321936-29321996)
[»] scaffold0421 (1 HSPs)
scaffold0421 (46-90)||(13270-13314)
[»] chr8 (1 HSPs)
chr8 (33-93)||(40499433-40499494)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 12105370 - 12105464
Alignment:
Q  3 gttgtgagatgaaatttctaaaatgtccattgccacatcagcagtggtacaaaagggtgtaccaaaagagtggtccatgtatctttttccttttt 97  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  12105370 gttgtgagatgaaattcctaaaatatcccttgccacatcagcagtggtataaaagggtgtaccaaaagggtggtctatgtatctttttccttttt 12105464  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 46644212 - 46644132
Alignment:
Q  3 gttgtgagatgaaatttctaaaatgtccattgccacatcagcagtggtacaaaagggtgtaccaaaagagtggtccatgta 83  Q
    ||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  46644212 gttgtaagatgaaattcctaaaatgtcccttgccacatcaccagtggtacaaaagggtgtaccaaaagagtggtctatgta 46644132  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 32179257 - 32179343
Alignment:
Q  1 tggttgtgagatgaaatttctaaaatgtccattgccacatcagcagtggtacaaaagggtgtaccaaaagagtggtccatgtatctttttcc 92  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||     |||||||| ||||||||||||||    
T  32179257 tggttgtgagatgaaattcctaaaatatcccttgccacatcagcagtggtacaaaggggtgtac-----gagtggtctatgtatctttttcc 32179343  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 1494015 - 1494073
Alignment:
Q  35 ccacatcagcagtggtacaaaagggtgtaccaaaagagtggtccatgtatctttttcct 93  Q
    |||||||| ||||||||||||||||||||   ||||||||||   ||||||||||||||    
T  1494015 ccacatcatcagtggtacaaaagggtgtatagaaagagtggtttgtgtatctttttcct 1494073  T

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Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 1326449 - 1326536
Alignment:
Q  3 gttgtgagatgaaatttctaaaatgtccattgccacatcagcagtggtacaaaagggtgtaccaaaagagtggtccatgtatcttttt 90  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |||||| |||||    
T  1326449 gttgtgagatgaaattcctaaaatgtcccttgccacatcagcagtggtacaaaagagtgtaccaaaagggtggtctatgtattttttt 1326536  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 33709637 - 33709572
Alignment:
Q  93 tttttctaaaaggtctcttttaatcattgcaactttcataattta-tattttggatattactctca 157  Q
    ||||| ||||||||||||||||| |||||||||||||  ||| || ||||||||| ||| ||||||    
T  33709637 tttttataaaaggtctcttttaaccattgcaactttccaaatatattattttggaaatttctctca 33709572  T

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Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 5568357 - 5568446
Alignment:
Q  5 tgtgagatgaaatttctaaaatgtccattgccacatcagcagtggtacaaaagggtgtaccaaa--agagtggtccatgtatctttttcc 92  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||  |||  |||||||| |||||||||||||||    
T  5568357 tgtgagatgaaatttctaaaatgtcccttgccacatcagcagtggtacaaaggggtgtattaaaagagagtggtacatgtatctttttcc 5568446  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 6408320 - 6408415
Alignment:
Q  1 tggttgtgagatgaaatttctaaaatgtccattgccacatcagcagtggtacaaaagggtg--taccaaaagagtggtccatgtatctttttcctt 94  Q
    |||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||| |||||  |||||||||||| ||| || |||| ||||||||    
T  6408320 tggttgtgagatgaaattcctaaaatatcccttgccacatgagcagtggtacaaaggggtgtataccaaaagagttgtctatttatcattttcctt 6408415  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 27008466 - 27008523
Alignment:
Q  35 ccacatcagcagtggtacaaaagggtgtaccaaaagagtggtccatgtatctttttcc 92  Q
    |||||||| ||||||||||||||||||||   ||||||||||   |||||||||||||    
T  27008466 ccacatcatcagtggtacaaaagggtgtatagaaagagtggtttgtgtatctttttcc 27008523  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 1829921 - 1829992
Alignment:
Q  91 cctttttctaaaaggtctcttttaatcattgcaactttcataatttatattttggatattactctcacaatt 162  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  1829921 ccttttactaacaggtctcttttaaccattgcaactttcataatttatattttggatattattctcacaatt 1829992  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 366
Target Start/End: Original strand, 1842287 - 1842427
Alignment:
Q  216 tagagagaaacccaacaaatttgcaatcaaatgctcctatatatttgagaaataaagcatatgctaataaagcctctgtagacttgcttagattaataat 315  Q
    ||||||||||||||||||||||||||||||| ||||| || |  |||||||||| | ||| ||  ||||       || |||||||||||||||||||||    
T  1842287 tagagagaaacccaacaaatttgcaatcaaacgctcccatct--ttgagaaatagaacatgtgtaaata-------tg-agacttgcttagattaataat 1842376  T
Q  316 tttttatgatgcttgagcatatatgtcaaataaattcttgaaaatattcat 366  Q
    || | |||||||||||||||||| ||||||||||||| |||  ||||||||    
T  1842377 ttgtcatgatgcttgagcatataagtcaaataaattcgtgaggatattcat 1842427  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 12489586 - 12489525
Alignment:
Q  33 tgccacatcagcagtggtacaaaagggtgtaccaaaagagtggtccatgtatctttttcctt 94  Q
    ||||||||||||||||||||||| |||||||    || ||||||| ||||||||||||||||    
T  12489586 tgccacatcagcagtggtacaaaggggtgtatattaaaagtggtctatgtatctttttcctt 12489525  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 1840462 - 1840398
Alignment:
Q  98 ctaaaaggtctcttttaatcattgcaactttcataatttatattttggatattactctcacaatt 162  Q
    ||||||||||||| |||| ||||||||||||   ||||||||||||  | |||||||||||||||    
T  1840462 ctaaaaggtctctcttaaccattgcaacttttcaaatttatattttaaaaattactctcacaatt 1840398  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 24870165 - 24870113
Alignment:
Q  108 tcttttaatcattgcaactttcataatttatattttggatattactctcacaa 160  Q
    |||||||| |||| ||||||||  ||||||||||||| || ||||||||||||    
T  24870165 tcttttaaccattacaactttccaaatttatattttgaatcttactctcacaa 24870113  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 18599023 - 18598932
Alignment:
Q  1 tggttgtgagatgaaatttctaaaatgtccattgccacatcagcagtggtacaaaagggtgtaccaaaagagtggtccatgtatctttttcct 93  Q
    ||||||||||||| ||||  |||||||||| || |||||||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||    
T  18599023 tggttgtgagatgtaattcttaaaatgtcccttaccacatcaacagtggtacaaa-gggtgtaccaaaagagtggtctatgtatctatttcct 18598932  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 29006284 - 29006218
Alignment:
Q  93 tttttctaaaaggtctcttttaatcattgcaactttcataatttatattttggatattactctcacaat 161  Q
    |||||||||||| ||||||||||| |||||||||||  | | |||||||||||| ||| ||||||||||    
T  29006284 tttttctaaaagatctcttttaattattgcaacttt--tcaattatattttggaaatttctctcacaat 29006218  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 22362786 - 22362729
Alignment:
Q  35 ccacatcagcagtggtacaaaagggtgtaccaaaagagtggtccatgtatctttttcc 92  Q
    ||||||||  |||||||||||| ||||||   ||||||||||| ||||||||||||||    
T  22362786 ccacatcattagtggtacaaaatggtgtatagaaagagtggtctatgtatctttttcc 22362729  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 23267358 - 23267272
Alignment:
Q  5 tgtgagatgaaatttctaaaatgtccattgccacatcagcagtggtacaaaagggtgtaccaaaagagtggtccatgtatctttttcct 93  Q
    |||||||||||||  ||||||||||| |||||||||||  |||| |||||| |||| |||||||||||||||| |||||||||||||||    
T  23267358 tgtgagatgaaatccctaaaatgtcccttgccacatcaatagtg-tacaaa-gggtctaccaaaagagtggtctatgtatctttttcct 23267272  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9380057 - 9380111
Alignment:
Q  1 tggttgtgagatgaaatttctaaaatgtccattgccacatcagcagtggtacaaa 55  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  9380057 tggttgtgagatgaaatccctaaaatgtcccttgccacatcagcagtggtacaaa 9380111  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 45883891 - 45883954
Alignment:
Q  33 tgccacatcagcagtggtacaaaagggtgta-ccaaaagagtggtccatgtatctttttccttt 95  Q
    |||||||||||||||||||  |||||||||| |||||||||||||| |  |||||||| |||||    
T  45883891 tgccacatcagcagtggtatgaaagggtgtatccaaaagagtggtctacctatcttttcccttt 45883954  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 29321996 - 29321936
Alignment:
Q  35 ccacatcagcagtggtacaaaagggtgtaccaaaagagtggtccatgtatctttttccttt 95  Q
    ||||||||||||||||| ||| |||||||   ||||||||||   ||||||||||||||||    
T  29321996 ccacatcagcagtggtagaaaggggtgtatagaaagagtggtttgtgtatctttttccttt 29321936  T

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Target: scaffold0421 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 13314 - 13270
Alignment:
Q  46 gtggtacaaaagggtgtaccaaaagagtggtccatgtatcttttt 90  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||    
T  13314 gtggtagaaaagggtgtaccaaaagagtggtacatgaatcttttt 13270  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 40499494 - 40499433
Alignment:
Q  33 tgccacatcagcagtggtacaaaagggtgtacc-aaaagagtggtccatgtatctttttcct 93  Q
    |||||||||||||||||| |||| ||| |||   |||||||||||| |||||||||||||||    
T  40499494 tgccacatcagcagtggtgcaaaggggcgtatagaaaagagtggtctatgtatctttttcct 40499433  T

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