View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3178_low_6 (Length: 382)
Name: NF3178_low_6
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 2008123 - 2008436
Alignment:
| Q |
1 |
tatcatgtctagttaggtagggatgaggaggtgtctttctatggagcttttggtgttctaagattgcatgattttgataggagatgttacagtctcatag |
100 |
Q |
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| T |
2008123 |
tatcatgtctagttaggtagggatgaggaggtgtctttctatggagtttttggtgttctaagattgcatgattttgataggagatgttacagtctcatag |
2008222 |
T |
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| Q |
101 |
cttatgacccacaaattagatgttcatcctaaggctctacaaattgtttcgtaatgtctttcactaaatatattatggagagttcacaatactttgactg |
200 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2008223 |
cttaggacccacaaattggatgttcatcctaaggctctacaaattgtttcgtaatgtctttcactaaatatattatggagaattcacaatactttgactg |
2008322 |
T |
|
| Q |
201 |
atagctgatggcaatctaaagcatcaattgttgaaaacttcatctctgcttccatggggctatgtgacaagtgatcttttattttactgattgctaatgg |
300 |
Q |
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| T |
2008323 |
atagctgatggcaatctaaagcatcaattgttgaaaacttcatctctgcttccatggggctatgtgacaagtgatcttttattttactgattgctaatgg |
2008422 |
T |
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| Q |
301 |
ggcttttattttag |
314 |
Q |
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|||||||||||||| |
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| T |
2008423 |
ggcttttattttag |
2008436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 2003667 - 2003774
Alignment:
| Q |
5 |
atgtctagttaggtagggatgagga-ggtgtctttctatggagcttttggtgttctaagattgcatgattttgataggagatgttacagtctcatagctt |
103 |
Q |
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| T |
2003667 |
atgtatagttaggtaaggatgagggtggtgtctttctacg-aggttttgatgttctaagatcgcatgattttgataggagatgttagagtcttatagctt |
2003765 |
T |
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| Q |
104 |
atgacccac |
112 |
Q |
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| T |
2003766 |
aggacccac |
2003774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 2003127 - 2003238
Alignment:
| Q |
5 |
atgtctagttaggtagggatgagga-ggtgtctttctatggagcttttggtgttctaagattgcatgattttgataggagatgttacagtctcatagctt |
103 |
Q |
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|||| |||||||||| ||||||| |||||||||||| | | ||||| |||||||||||| |||||||||||||| ||||||||| ||||| || |||| |
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| T |
2003127 |
atgtatagttaggtaatgatgagggtggtgtctttctacgaa-cttttagtgttctaagatcgcatgattttgataagagatgttaaagtcttattgctt |
2003225 |
T |
|
| Q |
104 |
atgacccacaaat |
116 |
Q |
| |
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| T |
2003226 |
aggacccacaaat |
2003238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 2008465 - 2008505
Alignment:
| Q |
325 |
gacaaattttcctttcttatcagttattgatgattgtttct |
365 |
Q |
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| T |
2008465 |
gacaaattttcctttcttatcagttattgatgattgtttct |
2008505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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