View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3178_low_8 (Length: 368)
Name: NF3178_low_8
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 33357867 - 33357527
Alignment:
| Q |
18 |
ctatgaagtactcctattttatcactaccaactatacataccaacttttattcaattgtttaaccaaaatagtatcaagttagttagtattgggcaatga |
117 |
Q |
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| T |
33357867 |
ctatgaagtactcctattttatcactaccaactatacataccaatttttattcaattgtttaaccaaaatagtatcaagttagttagtattgagcaatga |
33357768 |
T |
|
| Q |
118 |
tcaagattttgctatgcacaatacaccacaagtccacaattggattaagctaaaatgtttaatctaaagtgagttacaaatcaaatctttttctctcaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33357767 |
tcaagattttgctatgcacaatacaccacaagtccacaattggattaagctaaaatgtttaatctaaagtgagttacaaatcaactctttttctctcaag |
33357668 |
T |
|
| Q |
218 |
agcagaatatgacaacaaacgtcttttattaccccctctaggtttcattggaagctgacatggtataaccgtaaacgacccagaacccaaacaagttctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357667 |
agcagaatatgacaacaaacgtcttttattaccccctctaggtttcattggaagctgacatggtataaccgtaaacgacccagaacccaaacaagttctt |
33357568 |
T |
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| Q |
318 |
ggaaccgcaaaaaacttcacacactcctccataggtctctg |
358 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
33357567 |
ggaaccgcataaaacttcacacaatcctccataggtctctg |
33357527 |
T |
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