View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3178_low_9 (Length: 361)

Name: NF3178_low_9
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3178_low_9
NF3178_low_9
[»] chr1 (8 HSPs)
chr1 (124-340)||(49004599-49004821)
chr1 (31-133)||(26440724-26440828)
chr1 (31-107)||(32813265-32813341)
chr1 (43-126)||(37926456-37926541)
chr1 (31-103)||(51898689-51898761)
chr1 (31-105)||(2581935-2582009)
chr1 (57-124)||(49811559-49811628)
chr1 (31-103)||(8346394-8346466)
[»] chr6 (5 HSPs)
chr6 (31-128)||(31976243-31976342)
chr6 (36-103)||(15832599-15832666)
chr6 (31-105)||(32869698-32869772)
chr6 (31-104)||(11427639-11427712)
chr6 (31-107)||(31110767-31110841)
[»] chr5 (13 HSPs)
chr5 (31-107)||(26720534-26720610)
chr5 (31-107)||(26990283-26990359)
chr5 (31-104)||(14831835-14831908)
chr5 (31-107)||(2740292-2740368)
chr5 (31-107)||(15409616-15409692)
chr5 (31-107)||(28177793-28177869)
chr5 (35-131)||(2252178-2252276)
chr5 (31-105)||(33149644-33149718)
chr5 (31-124)||(31008987-31009082)
chr5 (31-105)||(18520890-18520964)
chr5 (31-105)||(40145427-40145501)
chr5 (56-118)||(16327906-16327970)
chr5 (31-103)||(20073522-20073594)
[»] chr7 (12 HSPs)
chr7 (34-126)||(26296641-26296735)
chr7 (31-107)||(46374808-46374884)
chr7 (31-107)||(21234419-21234495)
chr7 (31-107)||(35522894-35522970)
chr7 (55-104)||(46033831-46033880)
chr7 (31-105)||(3694387-3694461)
chr7 (31-107)||(3434580-3434656)
chr7 (31-107)||(19436193-19436269)
chr7 (31-105)||(8080389-8080463)
chr7 (31-105)||(38267060-38267134)
chr7 (35-129)||(41915735-41915831)
chr7 (35-128)||(22343356-22343451)
[»] chr8 (11 HSPs)
chr8 (31-107)||(4854869-4854945)
chr8 (31-107)||(10621093-10621169)
chr8 (31-105)||(12831067-12831141)
chr8 (31-130)||(15048188-15048288)
chr8 (31-105)||(34012302-34012376)
chr8 (55-107)||(20074964-20075016)
chr8 (31-103)||(37038501-37038573)
chr8 (31-107)||(43414587-43414663)
chr8 (31-105)||(10284637-10284711)
chr8 (31-104)||(15197354-15197427)
chr8 (54-123)||(30479503-30479574)
[»] chr3 (12 HSPs)
chr3 (31-107)||(41189770-41189846)
chr3 (31-130)||(11347928-11348029)
chr3 (31-107)||(26141538-26141614)
chr3 (31-107)||(51419366-51419442)
chr3 (31-107)||(20764921-20764997)
chr3 (57-105)||(33118883-33118931)
chr3 (56-118)||(13898086-13898150)
chr3 (31-105)||(53982031-53982105)
chr3 (31-107)||(24699960-24700036)
chr3 (55-107)||(35536644-35536696)
chr3 (55-107)||(35965804-35965856)
chr3 (57-105)||(36707456-36707504)
[»] chr2 (12 HSPs)
chr2 (31-107)||(40613908-40613984)
chr2 (33-125)||(36168834-36168928)
chr2 (31-104)||(5574494-5574567)
chr2 (31-103)||(42257215-42257287)
chr2 (31-130)||(38273148-38273249)
chr2 (35-123)||(43490121-43490211)
chr2 (31-105)||(10249388-10249462)
chr2 (31-105)||(13438363-13438437)
chr2 (31-105)||(17473040-17473114)
chr2 (31-105)||(28863475-28863549)
chr2 (31-105)||(32505654-32505728)
chr2 (57-105)||(30915483-30915531)
[»] chr4 (12 HSPs)
chr4 (31-107)||(31910210-31910286)
chr4 (39-124)||(55475190-55475277)
chr4 (31-105)||(11511468-11511542)
chr4 (31-105)||(24995113-24995187)
chr4 (57-105)||(480479-480527)
chr4 (31-107)||(50052434-50052510)
chr4 (31-105)||(6034064-6034138)
chr4 (53-123)||(8343191-8343263)
chr4 (43-124)||(29547977-29548060)
chr4 (31-107)||(40574797-40574873)
chr4 (31-87)||(41823920-41823976)
chr4 (31-107)||(48647732-48647808)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 124 - 340
Target Start/End: Original strand, 49004599 - 49004821
Alignment:
Q  124 tattaataaaaccggaattctccaacaaattgtagattgtgtttgcatagtcttttgtaatttctttactatannnnnnn-----atgaaaaattgtgct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||    
T  49004599 tattaataaaaccggaattctccaacaaattgtagattgtgtttgcatagtcttttgtaatttctttactatatttttttttttaatgaaaaattgtgct 49004698  T
Q  219 gacattaaaactaagatgtatttggaatccaaaa-aatgtatactcttaataaaagaaattaacatatttcttgagagaaaaaatgacgaagaaaaaaca 317  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49004699 gaaattaaaactaagatgtatttggaatccaaaaaaatgtatactcttaataaaagaaattaacatatttcttgagagagaaaatgacgaagaaaaaaca 49004798  T
Q  318 aatggtagacgattatcagaatg 340  Q
    |||| ||||||||||||||||||    
T  49004799 aatgatagacgattatcagaatg 49004821  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 26440828 - 26440724
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactctatta 128  Q
    ||||||| ||| ||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||| |||||||  | |||||||| ||||||  |||    
T  26440828 tgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatcctaactcattta 26440729  T
Q  129 ataaa 133  Q
    |||||    
T  26440728 ataaa 26440724  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 32813341 - 32813265
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| || |||||| | |||||||||| |||||| ||||||||||||||||| ||||| |||||||||||    
T  32813341 tgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggat 32813265  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 37926456 - 37926541
Alignment:
Q  43 ggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg--atttatctatcataactctat 126  Q
    ||||||||| |||||||||||| |||||||||||||||||||| | | ||||| ||||||| |  || ||| ||||||||||||||    
T  37926456 ggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataactctat 37926541  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 51898689 - 51898761
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 103  Q
    ||||||||||| ||||||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||    
T  51898689 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaa 51898761  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 2582009 - 2581935
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||    
T  2582009 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 2581935  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 49811559 - 49811628
Alignment:
Q  57 acgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactct 124  Q
    |||||||| |||||| ||||| ||| ||| ||| ||||||||||||||||  | ||||||||||||||||    
T  49811559 acgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactct 49811628  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 8346394 - 8346466
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 103  Q
    |||||||||||||| |||| | | | |||||||| |||||| ||||||||| ||| ||| ||||| |||||||    
T  8346394 tgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaa 8346466  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 31976342 - 31976243
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactctatta 128  Q
    ||||||||||| || | |||| | |||||||||| |||||| ||||||||||||||||||||||| ||||||||||  | ||| ||||||||||||||||    
T  31976342 tgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactctatta 31976243  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 15832666 - 15832599
Alignment:
Q  36 ttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 103  Q
    |||||||||||||| | | | ||||||||||||||| ||||||||| ||| | | |||||||||||||    
T  15832666 ttgtgcaggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaa 15832599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 32869772 - 32869698
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||    
T  32869772 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 32869698  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 11427712 - 11427639
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaag 104  Q
    ||||||||||| ||||||| | | | |||||||| |||||| ||||||||| ||||| | ||||| ||||||||    
T  11427712 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaag 11427639  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 31110767 - 31110841
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    |||||||||||||| |||||| ||  |||||||| |||||  |||| |||| ||||||| ||||| |||||||||||    
T  31110767 tgtgcttgtgcagggtccatgtggttacgtgtcagatttt--tgtgagtgtcaaagggtgtattgccacctaaggat 31110841  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 26720610 - 26720534
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| ||||||||| |||||||||||| |||||| ||| ||||||||||||| ||||| |||||||||||    
T  26720610 tgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggat 26720534  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 26990359 - 26990283
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| ||||||||| |||||||||||| |||||| ||| ||||||||||||| ||||| |||||||||||    
T  26990359 tgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggat 26990283  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 14831908 - 14831835
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaag 104  Q
    ||||||||||| ||||||| | | | |||||||| |||||||||||||||| ||||||| ||||| ||||||||    
T  14831908 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaag 14831835  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 2740368 - 2740292
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| ||||||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||||    
T  2740368 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggat 2740292  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 15409616 - 15409692
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| || |||||| ||| |||||||| |||||| ||||||||| ||||  | |||||||||||||||||    
T  15409616 tgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggat 15409692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 28177869 - 28177793
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    |||| |||||| || |||||| | |||||||||| |||||| ||||||||| ||||||| ||||| |||||||||||    
T  28177869 tgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggat 28177793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 2252178 - 2252276
Alignment:
Q  35 cttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactctattaata 131  Q
    ||||||| || |||||  |||||| ||||| |||||| ||||||||| || |||| ||||| ||||||||||  ||||| |||||||||||||| ||||    
T  2252178 cttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactctataaata 2252276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 33149644 - 33149718
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| ||||||| | | | ||||||||||||||| ||||||||| ||||||| ||||  |||||||||    
T  33149644 tgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagg 33149718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 31009082 - 31008987
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactct 124  Q
    ||||||||||| ||||||| | | | |||||||| |||||| |||||||||  |||  | ||||||||||||||||  ||||| ||||||||||||    
T  31009082 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataactct 31008987  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 18520890 - 18520964
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||    
T  18520890 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 18520964  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 40145501 - 40145427
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||| ||||||||||| ||||| |||||||||    
T  40145501 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagg 40145427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 16327970 - 16327906
Alignment:
Q  56 cacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg--atttatctatcat 118  Q
    ||||||||| |||||||||||||||| || || | ||||| |||||||||  |||||||||||||    
T  16327970 cacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctatcat 16327906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 20073522 - 20073594
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 103  Q
    |||||||||||||| |||| | || ||||||  | ||||||||||| |||| ||||||| |||||||| ||||    
T  20073522 tgtgcttgtgcagggtccacgtggtcacgtgcaagatttttatgtgagtgtcaaagggtgtattgtcatctaa 20073594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 26296735 - 26296641
Alignment:
Q  34 gcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactctat 126  Q
    |||||||| || |||||  |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||  | ||| ||||||||||||||    
T  26296735 gcttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataactctat 26296641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 46374808 - 46374884
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| || |||||| |||||||||||| |||||| ||||||||||||||||| | ||| |||||||||||    
T  46374808 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggat 46374884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 21234495 - 21234419
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| || | |||| ||| ||||||||||||||| |||| |||| ||||||| |||||||||||||||||    
T  21234495 tgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggat 21234419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 35522970 - 35522894
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| ||||||||  |||||||||||| |||||| ||||||||||||| ||| ||||| ||| |||||||    
T  35522970 tgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggat 35522894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 46033831 - 46033880
Alignment:
Q  55 ccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaag 104  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  46033831 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaag 46033880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 3694461 - 3694387
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| |||||||   | | |||||||| |||||| ||||||||||||| ||| |||||||||||||||    
T  3694461 tgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagg 3694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 3434656 - 3434580
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| ||||||| | | | ||||||||  ||||| ||||||||| ||||||| ||||| |||||||||||    
T  3434656 tgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggat 3434580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 19436193 - 19436269
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||| ||| ||||||| | | | |||||||| |||||| ||||||||| ||| ||| |||||||||||||||||    
T  19436193 tgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggat 19436269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 8080389 - 8080463
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||||||| ||||| ||||||| ||||| |||||||||    
T  8080389 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagg 8080463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 38267134 - 38267060
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||||||| |||||    
T  38267134 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagg 38267060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 41915831 - 41915735
Alignment:
Q  35 cttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat--ttatctatcataactctattaa 129  Q
    ||||||| || |||||  |||||| ||||| |||||| ||| ||||| || |||| ||||| ||||||||| |  |||| |||||||||||||||||    
T  41915831 cttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctattaa 41915735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 22343451 - 22343356
Alignment:
Q  35 cttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat--ttatctatcataactctatta 128  Q
    ||||||| || |||||  || ||| ||||| |||||| ||||||||| || |||| ||||| ||||||||| |  |||| ||||||||||||||||    
T  22343451 cttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctatta 22343356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 4854869 - 4854945
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    |||||||||||||| |||||| |||||| | ||| |||||||||| ||||||||||||| ||||| |||||||||||    
T  4854869 tgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggat 4854945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 10621093 - 10621169
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| ||||| ||| ||| |||||||| |||||| ||||||||| ||||||| ||||  |||||||||||    
T  10621093 tgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggat 10621169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 12831141 - 12831067
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| |||||||||||||||    
T  12831141 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagg 12831067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 15048188 - 15048288
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactctatta 128  Q
    ||||||||||| || |||||| ||| |||||||| |||||| ||| ||||| ||||||| ||||| ||||||||||  | ||| ||||||||||| ||||    
T  15048188 tgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgt-ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactcaatta 15048286  T
Q  129 at 130  Q
    ||    
T  15048287 at 15048288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 34012302 - 34012376
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| ||||||| | | | ||||||||||||||| ||||||||| ||||||| ||||  |||||||||    
T  34012302 tgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagg 34012376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 20074964 - 20075016
Alignment:
Q  55 ccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    |||||||||| |||||||||||||||| |||| || ||||| |||||||||||    
T  20074964 ccacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggat 20075016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 37038573 - 37038501
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 103  Q
    ||||||||||| ||||||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||    
T  37038573 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaa 37038501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 43414587 - 43414663
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| ||||||||| | |||||||| | |||||| ||||||||| ||||||| | ||| || ||||||||    
T  43414587 tgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggat 43414663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 10284637 - 10284711
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | ||||||||||||||| ||||||||| |||| || ||||||||| |||||    
T  10284637 tgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagg 10284711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 15197427 - 15197354
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaag 104  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| ||||||||    
T  15197427 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaag 15197354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 30479503 - 30479574
Alignment:
Q  54 gccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg--atttatctatcataactc 123  Q
    ||||| ||||| |||||||||||| ||| ||||||| ||||| |||||||||   ||||| |||||||||||    
T  30479503 gccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 41189770 - 41189846
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| || |||||| ||||||||||||||||||||||||||||| ||| | | ||||| |||||||||||    
T  41189770 tgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggat 41189846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 11347928 - 11348029
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactctatta 128  Q
    ||||||| |||||| |||||| |||||||||||| |||||| ||||| ||| ||||| | ||||||||||||||||  | ||| |||||||||||| |||    
T  11347928 tgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactctttta 11348027  T
Q  129 at 130  Q
    ||    
T  11348028 at 11348029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 26141538 - 26141614
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||  || |||||| | |||||||||| |||||| ||||||||||||||||| ||||| |||||||||||    
T  26141538 tgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggat 26141614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 51419366 - 51419442
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| || || ||| |||||||||||| |||||| ||||||||||||||| | |||||||| ||||||||    
T  51419366 tgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggat 51419442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 20764921 - 20764997
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||| | || |||||| |||||||||||| |||||| |||||||||||||| || ||||  |||||||||||    
T  20764921 tgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggat 20764997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 33118883 - 33118931
Alignment:
Q  57 acgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||    
T  33118883 acgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagg 33118931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 13898086 - 13898150
Alignment:
Q  56 cacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcat 118  Q
    ||||||||| |||||||||||||||| || |||| ||||| ||||||||||  ||||||||||||    
T  13898086 cacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcat 13898150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 53982105 - 53982031
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||    
T  53982105 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 53982031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 24699960 - 24700036
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    |||| |||| |||| |||| | ||||||||| || |||||||||||||||| ||| ||| ||||| || ||||||||    
T  24699960 tgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggat 24700036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 35536696 - 35536644
Alignment:
Q  55 ccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    |||||||||| |||||||||||||||| ||| ||| ||||| ||| |||||||    
T  35536696 ccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggat 35536644  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 35965804 - 35965856
Alignment:
Q  55 ccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    |||||||||| |||||||||||||||| ||||| | |||| |||| |||||||    
T  35965804 ccacgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggat 35965856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 36707456 - 36707504
Alignment:
Q  57 acgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    |||||||| |||||| ||||| ||| ||||||| |||||||||||||||    
T  36707456 acgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagg 36707504  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 40613908 - 40613984
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| || |||||| |||||||||||| |||||| ||||||||| ||||||| ||||| |||||||||||    
T  40613908 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggat 40613984  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 36168928 - 36168834
Alignment:
Q  33 tgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactcta 125  Q
    ||||||||| || |||||| ||||||||||||||||||| |||||| |||||||| | |||||||| |||||||  | ||| |||||||||||||    
T  36168928 tgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataactcta 36168834  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 5574494 - 5574567
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaag 104  Q
    ||||||||||| ||||||| | | | |||||||| |||||||||||||||| ||||||| ||||| ||||||||    
T  5574494 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaag 5574567  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 42257287 - 42257215
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 103  Q
    ||||||||||| || |||||| |||||||||||| |||||||||||||||| ||| | | ||||| |||||||    
T  42257287 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaa 42257215  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 38273148 - 38273249
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactctatta 128  Q
    |||||| |||| || |||||| ||| |||||||| |||||| ||||||||||||||||| ||||| || ||||| |  | ||| |||||||||||| |||    
T  38273148 tgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactctttta 38273247  T
Q  129 at 130  Q
    ||    
T  38273248 at 38273249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 43490211 - 43490121
Alignment:
Q  35 cttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg--atttatctatcataactc 123  Q
    ||||||| || |||||  |||||| ||||| |||||| ||||||||| || |||| |||||||||||||||   ||||| |||||||||||    
T  43490211 cttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 10249388 - 10249462
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||| ||| |||||||||||||||    
T  10249388 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagg 10249462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 13438437 - 13438363
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||| | |||||||||||||||    
T  13438437 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagg 13438363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 17473114 - 17473040
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| ||||||| | | | |||||||| |||||| ||||||||| ||||||| ||||| || ||||||    
T  17473114 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagg 17473040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 28863549 - 28863475
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||    
T  28863549 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 28863475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 32505654 - 32505728
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||| ||| |||||||||||||||    
T  32505654 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagg 32505728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 30915531 - 30915483
Alignment:
Q  57 acgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    |||||||| ||||||||||||| || ||||||| ||||| |||||||||    
T  30915531 acgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagg 30915483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 31910286 - 31910210
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| || |||||| ||| | |||||| |||||| ||||||||| |||| || |||||||||||||||||    
T  31910286 tgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggat 31910210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 55475277 - 55475190
Alignment:
Q  39 tgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactct 124  Q
    |||||| |||||  |||||| ||||| |||||| ||||||||| ||||||| ||||| ||||||||||  ||||| ||||||||||||    
T  55475277 tgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactct 55475190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 11511468 - 11511542
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | |||||||| |||||||||||||||| ||||||| ||||| |||||||||    
T  11511468 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagg 11511542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 24995113 - 24995187
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| || |||| | | | ||||||||||||||||||||||||| ||||||| ||||| || ||||||    
T  24995113 tgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagg 24995187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 480479 - 480527
Alignment:
Q  57 acgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    |||||||| |||||| ||||||||| ||||||| |||||||||||||||    
T  480479 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagg 480527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 50052434 - 50052510
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||||    
T  50052434 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggat 50052510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 6034138 - 6034064
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 105  Q
    ||||||||||| ||||||| | | | || ||||| |||||| ||||||||| ||||||| ||||| |||||||||    
T  6034138 tgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 6034064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 8343191 - 8343263
Alignment:
Q  53 ggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactc 123  Q
    |||||| ||||| |||||||||| ||||| ||||| | ||||| ||||||||||  ||||| |||||||||||    
T  8343191 ggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 29547977 - 29548060
Alignment:
Q  43 ggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactct 124  Q
    ||||||||  |||||| ||||| |||||| ||||||||| || || | ||||| ||||||||||  ||||| ||||||||||||    
T  29547977 ggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactct 29548060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 40574873 - 40574797
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||| | |||||||||  ||  ||||||| |||||| ||||||||| ||||||| ||||  |||||||||||    
T  40574873 tgtgcttgttcgggatccatgtagcagcgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggat 40574797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 41823976 - 41823920
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagg 87  Q
    ||||||||||| || |||||| | | |||||||| |||||| |||||||||||||||    
T  41823976 tgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggtgttaaagg 41823920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 48647732 - 48647808
Alignment:
Q  31 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 107  Q
    ||||||||||| |  |||| | | |||||||| | |||||||||||||||||||  ||| |||||| ||||||||||    
T  48647732 tgtgcttgtgcggagtccacgtgaccacgtgttagatttttatgtgggtgttaagaggtgtattgttacctaaggat 48647808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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