View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3181_high_1 (Length: 642)
Name: NF3181_high_1
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3181_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Complemental strand, 32288510 - 32288054
Alignment:
| Q |
8 |
agcagcacagacagactaactaagcaccattgccagcaccaagnnnnnnnnnn---ctaagcactaaaaatactatagctagctatgacccatgacctta |
104 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32288510 |
agcaacacacacagactaactaagcaccattgccagcaccaagaaaagaaaaaaaactaagcactaataatactatagctagctatgacccatgacctta |
32288411 |
T |
|
| Q |
105 |
tatatcaatgcacgcagcttcttcatttctgcttattgccacccatgttcatgttcattccagcattgccacctgcagcaccaccgccgccgccgcccat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
32288410 |
tatatcaatgcacgcagcttcttcatttctgcttattgccacccatgttcatgttcattccagtattgccacctgcagcaccaccgccgccgccacccat |
32288311 |
T |
|
| Q |
205 |
atttgcttcttgtccaccctgtcctccaccagcatttgcatcgccaaatccaggagcagcagtgccatatacagcagtgtattcataccttgaggtggtg |
304 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32288310 |
atttgcttcttgtccactctgtcctccaccagcatttgcatcgccaaatccaggagcagcagtgccatatacagcagtgtattcataccttgaggtggtg |
32288211 |
T |
|
| Q |
305 |
gtgccatcaggtgttactccggtggcctcataagcgtatgcggtcaccgggtatgcggctactggttccgtaacaccactttggaatgcatcgctcttct |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32288210 |
gtgccatcaggtgttactccggtggcctcataagcgtatgcggtcaccgggtatgcggctactggttccgtaacaccactttggaatgcatcgctcttcc |
32288111 |
T |
|
| Q |
405 |
gaatatctttttcactatcgcccgttctaggaagattttgaaattgatcgttagggc |
461 |
Q |
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|||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| |
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| T |
32288110 |
gaatatctttttcactatcgtccgttcttgaaagattttgaaattgatcgttagggc |
32288054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 505 - 623
Target Start/End: Complemental strand, 32288025 - 32287907
Alignment:
| Q |
505 |
tgtataaattcggcgagtgtgagataatgcgatgttattatatggatcaattcatattcaaaggaaatgcattatatatacttgagaggttaattaagcg |
604 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
32288025 |
tgtataaattcggcgagtgtgagatcatgcgatgttattatatggatcaattcatattcaagggaaaggcattatatatacttgagaggttaattaagcg |
32287926 |
T |
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| Q |
605 |
gtgagtgaggagtagcatt |
623 |
Q |
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||||||||||||||||||| |
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| T |
32287925 |
gtgagtgaggagtagcatt |
32287907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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