View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3181_high_12 (Length: 282)
Name: NF3181_high_12
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3181_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 37092492 - 37092243
Alignment:
| Q |
19 |
cttcccatgtagtagactagatgggtttactcatctaatctaagctaatctaataattttcaatcttgnnnnnnnctctcttacaatctcaaaaccaaaa |
118 |
Q |
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| T |
37092492 |
cttcccatgtagtagactagatgggtttactcatctaatctaa-----tctaataattttcaatcttgtttttttctctcttacaatctcaaaaccaaaa |
37092398 |
T |
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| Q |
119 |
gatcctttcttttctaaacaaagtcttttattatttattttgagagagtgaatctcgtgagtttgtgtgtacaagttttttcttcaatcttgcaccgatg |
218 |
Q |
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| T |
37092397 |
gatcctttcttttctaaacaaagtcttttattatttattttgagagagtgaatctcgtgagtttgtgtgtacaagttttttcttcaatcttgcaccgatg |
37092298 |
T |
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| Q |
219 |
aggatccgtaagagacaacttcttttctcttcttctgactctctttcacctttgc |
273 |
Q |
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| T |
37092297 |
aggatccgtaagagacaacttcttttctcttcttctgactctctttcacctttgc |
37092243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 69 - 272
Target Start/End: Complemental strand, 37098727 - 37098520
Alignment:
| Q |
69 |
taataattttcaatcttgnnnnnnnctctcttacaatctcaaaaccaaaagatcctttcttttctaaacaaagtcttttattatttattttgagagagtg |
168 |
Q |
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| T |
37098727 |
taataattttcaatcttgtttttttctctcataaaatctcaaaaccaaaagatcctttatcttctaaacaaagtcttttattc---atttttagagagtg |
37098631 |
T |
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| Q |
169 |
aatctcgtgagtttgtgtgtacaagttt-------tttctt-caatcttgcaccgatgaggatccgtaagagacaacttcttttctcttcttctgactct |
260 |
Q |
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| T |
37098630 |
aatctcgtgagtttg-gtgcagaactttcaaactttttctttcaatcttgcacccatgaggatccgtaagagacaacttcttttctcttcttctgactct |
37098532 |
T |
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| Q |
261 |
ctttcacctttg |
272 |
Q |
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| T |
37098531 |
ctttcacctttg |
37098520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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