View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3181_high_16 (Length: 248)
Name: NF3181_high_16
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3181_high_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 40785848 - 40786090
Alignment:
| Q |
6 |
gaagaatattgtgtatgttgatgttggtgttagtaaagtggataaggtgaaaaaatgtccttcaatgccaagtannnnnnncatagaagatggagaagat |
105 |
Q |
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| T |
40785848 |
gaagaagattgtgtatgttgatgttggtgttagtaaagtggataaggtgaaaaaatgtccttcaatgccaagtatttttttcatagaagatggagaagat |
40785947 |
T |
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| Q |
106 |
gatctagaagtgaaggatgaggaggttgaagtagaagatgagatttgtggtgttaatggtcaagaactttttgcaaaagctgaagctttcattggaaatt |
205 |
Q |
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| T |
40785948 |
gatctagaagtgaaggatgaggaggttgaagtagaagatgagatttgtggtgttaatggtcaagaactttttgcaaaagctgaagctttcattggaaatt |
40786047 |
T |
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| Q |
206 |
tctacaagcagttgaagatgcagagagaggagtgctgggattc |
248 |
Q |
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| T |
40786048 |
tctacaagcagttgaagatgcagagagaggaatgctgggattc |
40786090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 233
Target Start/End: Original strand, 40793621 - 40793827
Alignment:
| Q |
27 |
tgttggtgttagtaaagtggataaggtgaaaaaatgtccttcaatgccaagtannnnnnncatagaagatggagaagatgatctagaagtgaaggatgag |
126 |
Q |
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| T |
40793621 |
tgttggtgttacaaaagttgaaaagatgaaaaagtgtccttcaatggcaagtatcttttttatagaagatggagaagatgatttagaagtgaagaatgaa |
40793720 |
T |
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| Q |
127 |
gaggttgaagtagaagatgagatttgtggtgttaatggtcaagaactttttgcaaaagctgaagctttcattggaaatttctacaagcagttgaagatgc |
226 |
Q |
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| T |
40793721 |
gaggttgaagttgaagatgagatttatggtgttaatggacaagaactttttgcaaaagctgaggctttcataggtaacttctacaagcaattgaagatgc |
40793820 |
T |
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| Q |
227 |
agagaga |
233 |
Q |
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| T |
40793821 |
aaagaga |
40793827 |
T |
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