View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3181_high_18 (Length: 220)

Name: NF3181_high_18
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3181_high_18
NF3181_high_18
[»] chr2 (3 HSPs)
chr2 (18-204)||(34110960-34111145)
chr2 (36-115)||(19912283-19912362)
chr2 (32-106)||(45276350-45276424)
[»] chr4 (6 HSPs)
chr4 (18-115)||(52311321-52311418)
chr4 (18-115)||(5350916-5351012)
chr4 (18-115)||(17365657-17365754)
chr4 (36-115)||(12746632-12746711)
chr4 (56-107)||(26992023-26992074)
chr4 (56-105)||(20275932-20275981)
[»] chr5 (10 HSPs)
chr5 (18-115)||(16633364-16633459)
chr5 (18-115)||(17604676-17604777)
chr5 (59-115)||(19780063-19780119)
chr5 (56-107)||(19479562-19479613)
chr5 (36-115)||(29948504-29948583)
chr5 (36-115)||(35105034-35105113)
chr5 (36-71)||(21575050-21575085)
chr5 (32-86)||(31109117-31109171)
chr5 (59-112)||(19783313-19783366)
chr5 (35-115)||(35074212-35074293)
[»] chr7 (5 HSPs)
chr7 (18-115)||(7578522-7578619)
chr7 (18-115)||(14719414-14719515)
chr7 (31-118)||(35339055-35339142)
chr7 (36-108)||(26617857-26617929)
chr7 (34-115)||(42129509-42129590)
[»] chr3 (4 HSPs)
chr3 (36-105)||(20463226-20463295)
chr3 (31-115)||(7642304-7642387)
chr3 (36-115)||(44122089-44122168)
chr3 (36-105)||(20458861-20458929)
[»] chr1 (4 HSPs)
chr1 (56-107)||(40279266-40279317)
chr1 (31-115)||(11444121-11444205)
chr1 (46-115)||(18640589-18640657)
chr1 (35-107)||(32808781-32808852)
[»] chr8 (1 HSPs)
chr8 (36-112)||(28621742-28621817)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 34111145 - 34110960
Alignment:
Q  18 atgaataaatgactttaatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgatat 117  Q
    |||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  34111145 atgaataaatgattttagtggatgtccatccttaatcatccaccttcctataactcgcattagtgagtgaatagttagtggaccttaatta-tttgatat 34111047  T
Q  118 tgtgcttttaggttatttctgtagagttcacttgttaataaactaaacagtattgcagtcttagatgacaagtatcaacatatcgga 204  Q
     ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34111046 cgtgcttttaggttatttatgtagagttcacttgttaataaactaaacagtattgcagtcttagatgacaagtatcaacatatcgga 34110960  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 19912283 - 19912362
Alignment:
Q  36 tggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    |||||||||| ||||| || |||||||||||||||| | ||||| |||||| || |||||| | |||||||| |||||||    
T  19912283 tggatgtccacccttaatcttccaccttcctataacccctattattgaatgtatggttagtagtccttaattgctttgat 19912362  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 45276350 - 45276424
Alignment:
Q  32 ttaatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaat 106  Q
    ||||||||||||||||| |  || |||||||||||||||| | | |||||||||| || |||||||| |||||||    
T  45276350 ttaatggatgtccatccctcatcttccaccttcctataacccatgttagtgaatgtatggttagtggtccttaat 45276424  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 52311418 - 52311321
Alignment:
Q  18 atgaataaatgactttaatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    ||||||||||||||||| || |||||||||| ||||| |||||||||||||||| | |||| |||| ||||||||||||||||||||||| |||||||    
T  52311418 atgaataaatgactttagtgaatgtccatccctagtcttccaccttcctataacccctattggtgagtgaatagttagtggaccttaatttctttgat 52311321  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 5350916 - 5351012
Alignment:
Q  18 atgaataaatgactttaatggatgtccatccttagtcatccaccttcctataa-ctcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    |||||||| |||||| | ||||||||||||||||||| ||||||||||||||| |||  ||||| || ||||||||||| |||||||||||| ||||||    
T  5350916 atgaataattgactt-agtggatgtccatccttagtcttccaccttcctataatctc-cattagcgagtgaatagttagcggaccttaattattttgat 5351012  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 17365657 - 17365754
Alignment:
Q  18 atgaataaatgactttaatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    ||||| |||||| |||  ||||||| ||||||||||| ||||  ||| ||||||    |||||||| ||||||||||||||||||||||| |||||||    
T  17365657 atgaacaaatgattttggtggatgttcatccttagtcttccattttcttataaccttcattagtgagtgaatagttagtggaccttaatttctttgat 17365754  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 12746711 - 12746632
Alignment:
Q  36 tggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    |||||||||||||| | || ||||||||||||||||   |||||||||||| ||| ||| ||| ||||||| ||||||||    
T  12746711 tggatgtccatcctcaatcttccaccttcctataaccactattagtgaatgtatacttaatggtccttaatgactttgat 12746632  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 26992023 - 26992074
Alignment:
Q  56 tccaccttcctataactcgtattagtgaatgaatagttagtggaccttaatt 107  Q
    ||||||||||||||| ||  |||||| | |||||||||||||||||||||||    
T  26992023 tccaccttcctataaatctcattagtaagtgaatagttagtggaccttaatt 26992074  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 20275932 - 20275981
Alignment:
Q  56 tccaccttcctataactcgtattagtgaatgaatagttagtggaccttaa 105  Q
    |||||||||||||||||   |||||| | |||||||||||||||||||||    
T  20275932 tccaccttcctataacttccattagtaagtgaatagttagtggaccttaa 20275981  T

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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 16633459 - 16633364
Alignment:
Q  18 atgaataaatgactttaatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    ||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |  ||||| || |||||||||||||||||||||||||||||||    
T  16633459 atgaataaatgactt-agtggatgtccatccttagtcttccaccttcctataacccc-attagcgagtgaatagttagtggaccttaattactttgat 16633364  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 17604676 - 17604777
Alignment:
Q  18 atgaataaatgactttaatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatga----atagttagtggaccttaattactttg 113  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |  |||||||| |||    ||||||||||||||||||||| ||||    
T  17604676 atgaataaatgactttagtggatgtccatccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttg 17604775  T
Q  114 at 115  Q
    ||    
T  17604776 at 17604777  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 19780119 - 19780063
Alignment:
Q  59 accttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    |||||||||||||||  |||||| | ||||||||||||||||||||||||| |||||    
T  19780119 accttcctataactctcattagtaagtgaatagttagtggaccttaattaccttgat 19780063  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 19479613 - 19479562
Alignment:
Q  56 tccaccttcctataactcgtattagtgaatgaatagttagtggaccttaatt 107  Q
    ||||||||||||||||||  |||||| | |||||||||||||||||||||||    
T  19479613 tccaccttcctataactctcattagtaagtgaatagttagtggaccttaatt 19479562  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 29948583 - 29948504
Alignment:
Q  36 tggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    |||||||||||||||| || ||||| ||||||||| || ||| |||||| | || |||| ||| ||||||||||||||||    
T  29948583 tggatgtccatccttaatcttccacattcctataagtcctataagtgaagggatggttactggtccttaattactttgat 29948504  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 35105034 - 35105113
Alignment:
Q  36 tggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    ||||||||||||||||||| | |||||| | |||||||  || |||||||| || |||||||  ||||||||||||||||    
T  35105034 tggatgtccatccttagtcttacaccttgcaataactcccataagtgaatggatggttagtgatccttaattactttgat 35105113  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 21575085 - 21575050
Alignment:
Q  36 tggatgtccatccttagtcatccaccttcctataac 71  Q
    ||||||||||||||||||| ||||||||||||||||    
T  21575085 tggatgtccatccttagtcttccaccttcctataac 21575050  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 31109171 - 31109117
Alignment:
Q  32 ttaatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatg 86  Q
    |||||||||||||||||||| ||  |||| |||||||||||  ||||||||||||    
T  31109171 ttaatggatgtccatccttaatctcccacattcctataacttctattagtgaatg 31109117  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 19783366 - 19783313
Alignment:
Q  59 accttcctataactcgtattagtgaatgaatagttagtggaccttaattacttt 112  Q
    |||||||||||||||  |||||| | ||||||||||||||| ||||||| ||||    
T  19783366 accttcctataactctcattagtaagtgaatagttagtggaacttaattgcttt 19783313  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 35074293 - 35074212
Alignment:
Q  35 atggatgtccatcctta-gtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    ||||||||||||||||| ||| | ||||||||||||| ||  | ||||||||| ||  ||||||| |||||||| |||||||    
T  35074293 atggatgtccatccttaagtctttcaccttcctataattctcactagtgaatgtatgattagtggtccttaattgctttgat 35074212  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 7578522 - 7578619
Alignment:
Q  18 atgaataaatgactttaatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||  || |||||||| || || ||||| ||||||||||||||||    
T  7578522 atgaataaatgactttagtggatgtccatccttagtcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgat 7578619  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 14719515 - 14719414
Alignment:
Q  18 atgaataaatgactttaatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatga----atagttagtggaccttaattactttg 113  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |  |||||||| |||    ||||||||||||||||||||| ||||    
T  14719515 atgaataaatgactttagtggatgtccgtccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttg 14719416  T
Q  114 at 115  Q
    ||    
T  14719415 at 14719414  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 35339142 - 35339055
Alignment:
Q  31 tttaatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgatatt 118  Q
    |||| |||||||||||| |||||| ||||||||||||||||||  || |||||||| || |||| ||| |||||||||||||||||||    
T  35339142 tttagtggatgtccatcattagtcttccaccttcctataactcccataagtgaatggatggttaatggtccttaattactttgatatt 35339055  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 26617929 - 26617857
Alignment:
Q  36 tggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaatta 108  Q
    ||||| ||||||||||||| | ||| |||||||||| |  |||| ||| ||||||||||||||||||||||||    
T  26617929 tggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaatta 26617857  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 42129509 - 42129590
Alignment:
Q  34 aatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    ||||||||  |||||||| || |||||||||||||||| | |||||||||||  || |||| ||  |||||||| |||||||    
T  42129509 aatggatgctcatccttaatcttccaccttcctataacccctattagtgaatatatggttaatgatccttaatttctttgat 42129590  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 20463295 - 20463226
Alignment:
Q  36 tggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaa 105  Q
    ||||||||||| ||||||| ||| |||||||||||  | |||||||||||| || |||||||||||||||    
T  20463295 tggatgtccattcttagtcttcctccttcctataatccctattagtgaatgtatggttagtggaccttaa 20463226  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 7642304 - 7642387
Alignment:
Q  31 tttaatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    |||| |||||||||||| ||| || |||||||||||||||| |  ||||||||||  || |||||||| ||||||||||||||||    
T  7642304 tttagtggatgtccatctttaatcttccaccttcctataac-cccattagtgaatttatggttagtggtccttaattactttgat 7642387  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 44122168 - 44122089
Alignment:
Q  36 tggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    |||||||||||||||| || ||||||||||||||||   |||||||||||| ||  ||| ||| ||||||| ||||||||    
T  44122168 tggatgtccatccttaatcttccaccttcctataaccaatattagtgaatgtatgcttaatggtccttaatgactttgat 44122089  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 20458929 - 20458861
Alignment:
Q  36 tggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaa 105  Q
    |||||||||||||||| || |||||||||||||||| |  |||||||||||  | ||||||| |||||||    
T  20458929 tggatgtccatccttaatcttccaccttcctataac-cccattagtgaatgtttggttagtgaaccttaa 20458861  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 40279317 - 40279266
Alignment:
Q  56 tccaccttcctataactcgtattagtgaatgaatagttagtggaccttaatt 107  Q
    ||||||||||||||||||  |||||| | |||||||||||||||||||||||    
T  40279317 tccaccttcctataactcccattagtaagtgaatagttagtggaccttaatt 40279266  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 11444205 - 11444121
Alignment:
Q  31 tttaatggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    |||| |||||||||||||||| || ||||||||||||||||   |||||||||||| ||  ||| |||  |||||| ||||||||    
T  11444205 tttagtggatgtccatccttaatcttccaccttcctataaccattattagtgaatgtatgcttaatggttcttaatgactttgat 11444121  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 18640657 - 18640589
Alignment:
Q  46 tccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattactttgat 115  Q
    |||||| || |||||||||||||||| |  ||||||||||| || |||||||| |||||||| |||||||    
T  18640657 tccttaatcttccaccttcctataac-ctcattagtgaatgtatggttagtggtccttaattgctttgat 18640589  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 32808781 - 32808852
Alignment:
Q  35 atggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaatt 107  Q
    |||||| |||||||||| || |||||||||||||||| |  ||||||||||  || |||||||| ||||||||    
T  32808781 atggatttccatccttaatcttccaccttcctataac-cccattagtgaatatatggttagtggtccttaatt 32808852  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 28621742 - 28621817
Alignment:
Q  36 tggatgtccatccttagtcatccaccttcctataactcgtattagtgaatgaatagttagtggaccttaattacttt 112  Q
    |||||||||||| ||||   ||||||||| ||||||||  || |||||||| || |||||||| |||||||||||||    
T  28621742 tggatgtccatcattagctttccaccttc-tataactcacataagtgaatggatggttagtggtccttaattacttt 28621817  T

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