View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3181_high_2 (Length: 595)

Name: NF3181_high_2
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3181_high_2
NF3181_high_2
[»] chr1 (13 HSPs)
chr1 (265-561)||(29255167-29255464)
chr1 (1-262)||(33861425-33861697)
chr1 (1-262)||(33919225-33919497)
chr1 (302-561)||(13263774-13264033)
chr1 (288-418)||(9981375-9981505)
chr1 (271-433)||(29254657-29254820)
chr1 (265-392)||(17238399-17238527)
chr1 (265-392)||(6632008-6632136)
chr1 (265-378)||(6631316-6631429)
chr1 (265-391)||(17237705-17237832)
chr1 (333-433)||(13264371-13264472)
chr1 (262-313)||(19990273-19990324)
chr1 (262-313)||(47966992-47967043)
[»] chr2 (9 HSPs)
chr2 (263-561)||(30617392-30617693)
chr2 (265-378)||(41320009-41320122)
chr2 (269-391)||(13545291-13545414)
chr2 (265-429)||(13544598-13544762)
chr2 (265-392)||(41320703-41320831)
chr2 (273-340)||(11169280-11169347)
chr2 (259-339)||(8143321-8143402)
chr2 (265-342)||(15555016-15555093)
chr2 (265-313)||(24983125-24983173)
[»] chr4 (3 HSPs)
chr4 (309-561)||(32526833-32527087)
chr4 (260-410)||(32527453-32527604)
chr4 (261-307)||(27110485-27110531)
[»] chr3 (4 HSPs)
chr3 (265-378)||(52362640-52362753)
chr3 (265-369)||(16674246-16674350)
chr3 (290-392)||(16673555-16673658)
chr3 (261-325)||(48207595-48207659)
[»] chr5 (3 HSPs)
chr5 (261-392)||(41516456-41516588)
chr5 (265-313)||(8469813-8469861)
chr5 (328-391)||(41517157-41517221)
[»] chr6 (3 HSPs)
chr6 (282-424)||(14125165-14125308)
chr6 (510-561)||(14125605-14125656)
chr6 (261-307)||(2479292-2479338)
[»] chr7 (1 HSPs)
chr7 (259-291)||(29525101-29525133)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 265 - 561
Target Start/End: Complemental strand, 29255464 - 29255167
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 364  Q
    ||||||||||||| |||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29255464 ggagggatatattgactctaagagtaagtttctagacttacaccaaatcacaacctttcattgtattttaatctaatggcttgaatgatagttttaaatg 29255365  T
Q  365 ttaatcatgtgacctctttttggatctccatccaaataaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactc 464  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29255364 ttaatcatatgacctctttttggatctccatccaaataaagacattctccaattattctcccttaattaaacaaaaatctcgttcctcttaaactcactc 29255265  T
Q  465 ttaaatgtgtttgtttttaatttcagttaaaataac-aannnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatccata 561  Q
    ||||||||||| |||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29255264 ttaaatgtgttcgtttttaatttcagttaaaataacaaaaaattttaactccattatataagtaactcgcccaattgaatttgtatataccatccata 29255167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 33861697 - 33861425
Alignment:
Q  1 ccaaggattttctttgcataaccaaagttcttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33861697 ccaaggattttctttgcataaccaaagttcttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatcct 33861598  T
Q  101 tttaccttctaccacttaagaa-----------gtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacat 189  Q
    ||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861597 tttaccttctaccacttaagaaattttgtttaagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacat 33861498  T
Q  190 gtcaaaattagcttatattgaaacacaattaatattattattcgaaccgcttactacatgtatattctaaaaa 262  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33861497 gtcaaaattaacttatattgaaacacaattaatattagtattcgaaccgcttactacatgtatattctaaaaa 33861425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 33919225 - 33919497
Alignment:
Q  1 ccaaggattttctttgcataaccaaagttcttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33919225 ccaaggattttctttgcataaccaaagttcttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatcct 33919324  T
Q  101 tttaccttctaccacttaagaa-----------gtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacat 189  Q
    ||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33919325 tttaccttctaccacttaagaaattttgtttaagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacat 33919424  T
Q  190 gtcaaaattagcttatattgaaacacaattaatattattattcgaaccgcttactacatgtatattctaaaaa 262  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33919425 gtcaaaattaacttatattgaaacacaattaatattagtattcgaaccgcttactacatgtatattctaaaaa 33919497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 302 - 561
Target Start/End: Original strand, 13263774 - 13264033
Alignment:
Q  302 ttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaat 401  Q
    |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13263774 ttactccaaatcacaacctttcattgtattttaatctaacggttcgaatgatagttttaaatgttaatcatgtgacctctttttg-atctccatccaaat 13263872  T
Q  402 aaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgtttgtttttaatttcagttaaaataac- 500  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  13263873 aaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgtttttaatttcagttaaaataaca 13263972  T
Q  501 aannnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatccata 561  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13263973 aatttttttaactccattatataagtaactcgcccaattgaatttgtatataccatccata 13264033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 288 - 418
Target Start/End: Complemental strand, 9981505 - 9981375
Alignment:
Q  288 gtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttgg 387  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||    
T  9981505 gtaagtttgtagacttactccaaatcacaacctttcattgtattttaatctaacgacttgaatgataattttaaatgttaaacatgtgacctctttttgg 9981406  T
Q  388 atctccatccaaataaaaactttctccaatt 418  Q
    ||||||||||  ||||| |||||||||||||    
T  9981405 atctccatcctgataaagactttctccaatt 9981375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 271 - 433
Target Start/End: Original strand, 29254657 - 29254820
Alignment:
Q  271 atatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatc 370  Q
    |||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  29254657 atattttaactccaagagtaagtttgtagacttactccaaatcataacctttcattatattttaatctaacggcttgaatgatagtcttaattgttaatc 29254756  T
Q  371 atgtga-cctctttttggatctccatccaaataaaaactttctccaattattctcccttaatta 433  Q
    |||||| |||||||||| |||||| |||  ||||| ||||||||  |||||||||  |||||||    
T  29254757 atgtgaccctctttttgaatctccttcctcataaatactttctctgattattctcttttaatta 29254820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 265 - 392
Target Start/End: Complemental strand, 17238527 - 17238399
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 364  Q
    |||||||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  17238527 ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 17238428  T
Q  365 ttaatcatgtgacc-tctttttggatctc 392  Q
    |||||||||||||| ||||||||||||||    
T  17238427 ttaatcatgtgaccatctttttggatctc 17238399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 265 - 392
Target Start/End: Complemental strand, 6632136 - 6632008
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 364  Q
    |||||||||| |  ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  6632136 ggagggatatttagactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 6632037  T
Q  365 ttaatcatgtgacc-tctttttggatctc 392  Q
    |||||||||||||| ||||||||||||||    
T  6632036 ttaatcatgtgaccatctttttggatctc 6632008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 265 - 378
Target Start/End: Original strand, 6631316 - 6631429
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 364  Q
    |||||||||| || |||||||| |||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  6631316 ggagggatattttgactccaagggtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 6631415  T
Q  365 ttaatcatgtgacc 378  Q
    ||||||||||||||    
T  6631416 ttaatcatgtgacc 6631429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 17237705 - 17237832
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 364  Q
    |||||||||| || ||| ||||||||||||| ||||||||||| ||||  | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  17237705 ggagggatattttgactgcaagagtaagtttatagacttactccaaatatccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 17237804  T
Q  365 ttaatcatgtgacc-tctttttggatct 391  Q
    |||||||||||||| ||||| |||||||    
T  17237805 ttaatcatgtgaccatctttgtggatct 17237832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 433
Target Start/End: Complemental strand, 13264472 - 13264371
Alignment:
Q  333 taatctaacggcttgaatgatagttttaaatgttaatcatgtga-cctctttttggatctccatccaaataaaaactttctccaattattctcccttaat 431  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |||||| |||  ||||| ||||| ||  |||||||||  |||||    
T  13264472 taatctaacggcttgaatgatagtcttaattgttaatcatgtgaccctctttttgaatctccttcctcataaatactttatctgattattctcttttaat 13264373  T
Q  432 ta 433  Q
    ||    
T  13264372 ta 13264371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 19990273 - 19990324
Alignment:
Q  262 aggggagggatatattaactccaagagtaagtttttagacttactctaaatc 313  Q
    |||||||||||||||| ||||||||||||||| |  |||||||||| |||||    
T  19990273 aggggagggatatattgactccaagagtaagtctaaagacttactccaaatc 19990324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 47966992 - 47967043
Alignment:
Q  262 aggggagggatatattaactccaagagtaagtttttagacttactctaaatc 313  Q
    |||||||||||||||| ||||||||||||||| |||| | |||||| |||||    
T  47966992 aggggagggatatattgactccaagagtaagtgtttaaagttactccaaatc 47967043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 263 - 561
Target Start/End: Original strand, 30617392 - 30617693
Alignment:
Q  263 ggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaa 362  Q
    ||||||||||||||| |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30617392 ggggagggatatattgactcaaaaagtaagtttctagacttactctaaatcacaacctttcattgtattttaatctaacagcttgaatgatagttttaaa 30617491  T
Q  363 tgttaatcatgtgacctctttttggatctccatccaaataaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcac 462  Q
    | |||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30617492 tattaaccatgtgacctctttttggatctccatccacacaaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcac 30617591  T
Q  463 tcttaaatgtgtttgtttttaatttcagttaaaataacaa---nnnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatcca 559  Q
    ||||||||||||| ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30617592 tcttaaatgtgttcgtttttaatttcagttaaaataacaaatttttttttaactccattatataagtaactcgcccaattgaattggtatataccatcca 30617691  T
Q  560 ta 561  Q
    ||    
T  30617692 ta 30617693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 265 - 378
Target Start/End: Original strand, 41320009 - 41320122
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 364  Q
    |||||||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  41320009 ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 41320108  T
Q  365 ttaatcatgtgacc 378  Q
    ||||||||||||||    
T  41320109 ttaatcatgtgacc 41320122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 269 - 391
Target Start/End: Complemental strand, 13545414 - 13545291
Alignment:
Q  269 ggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaa 368  Q
    |||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||   ||||||| ||||||    
T  13545414 ggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgggttttaattgttaa 13545315  T
Q  369 tcatgtgacc-tctttttggatct 391  Q
    |||| ||||| ||||| |||||||    
T  13545314 tcatatgaccatctttgtggatct 13545291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 429
Target Start/End: Original strand, 13544598 - 13544762
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 364  Q
    |||||||||| || ||| ||||||||||||| |||||||| || ||||| | |||||||||  |||||||||||||  | || ||||  |||||||| ||    
T  13544598 ggagggatattttgacttcaagagtaagtttatagacttattccaaatctccacctttcatcttattttaatctaatagtttaaatgtgagttttaattg 13544697  T
Q  365 ttaatcatgtgacc-tctttttggatctccatccaaataaaaactttctccaattattctccctta 429  Q
    |||||||||||||| | ||||||||||| ||| |  ||||| | |||||||| ||| |||||||||    
T  13544698 ttaatcatgtgaccatttttttggatct-cattcttataaatattttctccatttaatctccctta 13544762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 265 - 392
Target Start/End: Complemental strand, 41320831 - 41320703
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 364  Q
    |||| ||||| || ||||||| ||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  | |||||| ||    
T  41320831 ggagagatattttgactccaatagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgaattttaattg 41320732  T
Q  365 ttaatcatgtgacc-tctttttggatctc 392  Q
    ||||||||| |||| ||||||||||||||    
T  41320731 ttaatcatgcgaccatctttttggatctc 41320703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 11169280 - 11169347
Alignment:
Q  273 atattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaa 340  Q
    ||||| ||||||||| ||||||| |||| |||||||||||| | |||||||||   ||||||||||||    
T  11169280 atattgactccaagaataagtttatagatttactctaaatctccacctttcatctcattttaatctaa 11169347  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 8143402 - 8143321
Alignment:
Q  259 aaaaggggagggatatattaactccaa-gagtaagtttttagacttactctaaatcacaacctttcattgtattttaatcta 339  Q
    |||||||||||||||| || ||||||| |||||| | ||| || |||||| |||||||| || |||||| | ||||||||||    
T  8143402 aaaaggggagggatattttgactccaaggagtaactcttttgagttactccaaatcacatcccttcattatgttttaatcta 8143321  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 15555093 - 15555016
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacg 342  Q
    |||||||||| |||||||||||||||| | |||  | |||||| |||||||| || | |||| |||||||||| ||||    
T  15555093 ggagggatattttaactccaagagtaactcttttaagttactccaaatcacatccctccattttattttaatccaacg 15555016  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 24983125 - 24983173
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatc 313  Q
    ||||||||||||  ||||||||||||||| |||| | ||||||||||||    
T  24983125 ggagggatatatcgactccaagagtaagtctttaaagttactctaaatc 24983173  T

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Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 309 - 561
Target Start/End: Original strand, 32526833 - 32527087
Alignment:
Q  309 aaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaataaaaact 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32526833 aaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaataaagact 32526932  T
Q  409 ttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgtttgtttttaatttcagttaaaataac--aannnn 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||  ||        
T  32526933 ttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgttttttatttcagttaaaataacaaaaaaaa 32527032  T
Q  507 nnnaactccattatataagtaactcgcccaattgaatttgtatataccatccata 561  Q
       |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32527033 tttaactccattatataagtaactcgcccaattgaatttctatataccatccata 32527087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 260 - 410
Target Start/End: Complemental strand, 32527604 - 32527453
Alignment:
Q  260 aaaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagtttt 359  Q
    ||||||||| ||||| || |||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| ||    
T  32527604 aaaggggagagatattttgactctaagagtaagtttgtagacttactccaaatcacaacctttcattatattttaatctaacagcttgaatgatagtctt 32527505  T
Q  360 aaatgttaatcatgtga-cctctttttggatctccatccaaataaaaacttt 410  Q
    || |||||||||||||| |||||||||| |||||| |||  ||||| |||||    
T  32527504 aattgttaatcatgtgaccctctttttgaatctccttcctcataaatacttt 32527453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 27110531 - 27110485
Alignment:
Q  261 aaggggagggatatattaactccaagagtaagtttttagacttactc 307  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  27110531 aaggggagggatatattgactccaagagtaagtgtttaaagttactc 27110485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 265 - 378
Target Start/End: Original strand, 52362640 - 52362753
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 364  Q
    |||||||||| || ||||||||||||||||| ||||| ||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  52362640 ggagggatattttgactccaagagtaagtttatagacctactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 52362739  T
Q  365 ttaatcatgtgacc 378  Q
    ||||||||||||||    
T  52362740 ttaatcatgtgacc 52362753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 265 - 369
Target Start/End: Complemental strand, 16674350 - 16674246
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 364  Q
    |||| ||||| || |||| |||||||||||| ||||||||||| |||||   |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  16674350 ggagagatattttgactcaaagagtaagtttatagacttactccaaatctacacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 16674251  T
Q  365 ttaat 369  Q
    |||||    
T  16674250 ttaat 16674246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 392
Target Start/End: Original strand, 16673555 - 16673658
Alignment:
Q  290 aagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacc-tctttttgga 388  Q
    |||||| ||||||||||| ||||  | |||||||||  ||||||||||||| || || ||||  | |||||| |||||||||||||||| ||||||||||    
T  16673555 aagtttatagacttactcaaaatatccacctttcatcttattttaatctaatggtttaaatgtgaattttaattgttaatcatgtgaccatctttttgga 16673654  T
Q  389 tctc 392  Q
    ||||    
T  16673655 tctc 16673658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 48207595 - 48207659
Alignment:
Q  261 aaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcat 325  Q
    ||||||||||||||||| ||||||||| ||||| |  ||||||| || |||||  ||||||||||    
T  48207595 aaggggagggatatattgactccaagaataagtctaaagacttattccaaatctaaacctttcat 48207659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 261 - 392
Target Start/End: Original strand, 41516456 - 41516588
Alignment:
Q  261 aaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagtttta 360  Q
    |||||||||||||| || |||| |||||||  ||| ||||||||||| ||||| | |||||||||  |||||||||||||  | || ||||  |||||||    
T  41516456 aaggggagggatattttgactctaagagtatatttatagacttactccaaatctccacctttcatcttattttaatctaatagtttaaatgtgagtttta 41516555  T
Q  361 aatgttaatcatgtgacc-tctttttggatctc 392  Q
    | |||||||||||||||| ||||||| ||||||    
T  41516556 attgttaatcatgtgaccatcttttttgatctc 41516588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 8469861 - 8469813
Alignment:
Q  265 ggagggatatattaactccaagagtaagtttttagacttactctaaatc 313  Q
    |||||||||| || ||||||||||||| ||| |||||||||||||||||    
T  8469861 ggagggatattttgactccaagagtaaatttatagacttactctaaatc 8469813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 391
Target Start/End: Complemental strand, 41517221 - 41517157
Alignment:
Q  328 tattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacc-tctttttggatct 391  Q
    ||||||||||||| ||||| ||||  |||||||| |||||||||||||||| ||||| |||||||    
T  41517221 tattttaatctaatggcttaaatgtgagttttaattgttaatcatgtgaccatctttgtggatct 41517157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 282 - 424
Target Start/End: Original strand, 14125165 - 14125308
Alignment:
Q  282 ccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctc- 380  Q
    |||| ||||||||| ||||||||||| ||||| | |||||||||| ||||||||| |||||||||||    ||||||||| ||||||| |||| |||||     
T  14125165 ccaaaagtaagtttatagacttactccaaatcgctacctttcattttattttaatttaacggcttgatcattagttttaattgttaataatgtaacctcc 14125264  T
Q  381 tttttggatctccatccaaataaaaactttctccaattattctc 424  Q
    |||||  |||||  ||   ||||| |||||||||||||||||||    
T  14125265 tttttaaatctcattcttcataaatactttctccaattattctc 14125308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 14125656 - 14125605
Alignment:
Q  510 aactccattatataagtaactcgcccaattgaatttgtatataccatccata 561  Q
    ||||||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  14125656 aactccattatataagtaacttgcccaattgattttgaatataccatccata 14125605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 2479292 - 2479338
Alignment:
Q  261 aaggggagggatatattaactccaagagtaagtttttagacttactc 307  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  2479292 aaggggagggatatattgactccaagagtaagtgtttaaagttactc 2479338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 29525101 - 29525133
Alignment:
Q  259 aaaaggggagggatatattaactccaagagtaa 291  Q
    ||||||||||||||||||| |||||||||||||    
T  29525101 aaaaggggagggatatattgactccaagagtaa 29525133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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