View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3181_high_8 (Length: 364)
Name: NF3181_high_8
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3181_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 41341844 - 41342177
Alignment:
| Q |
13 |
aatattaataatagcactacaaattaacaatttgcattgaatagacaagctctagaacaagtagcaaagatgttcaagaccaaactagtatccaaatgca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41341844 |
aatattaataatagcactacaaattaacaatttgcattgaatagacaagccctagaacaagtagcaaagatgttcaagaccaaactagtatccaaatgca |
41341943 |
T |
|
| Q |
113 |
cattgatgatgcttcccaaccatctccaaatattagcgatataagaacaatcacataaaatatggttcttgatctggttggatctaaagaatatggttgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41341944 |
cattgatgatgcttcccaaccatctccaaatattagcgatataagaacaatcacataaaatatggttcttgatctggttggatctaaagaatatggttgg |
41342043 |
T |
|
| Q |
213 |
cttattgtagaagatttgttatgtatgttgtcgtcgtcgtccaatgcagtttgtcatgagtctgtctctaccggagggggtggtataccttcatacactc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41342044 |
cttattgtagaagatttgttatgtatgttgtcgtcgtcgtccaatgcagtttgtcatgagtctgtctctaccggagggggtggtataccttcatacactc |
41342143 |
T |
|
| Q |
313 |
taactttcaagttcgtgagattttagtgagatac |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41342144 |
taactttcaagttcgtgagattttagtgagatac |
41342177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University