View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3181_low_11 (Length: 327)
Name: NF3181_low_11
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3181_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 23859091 - 23859391
Alignment:
| Q |
13 |
aatatgactataatatatcaagagtcccaacatggtacacaagtaagctttagacgcgaaaacatgtaccatgcttccttatcatgccttaaatcatgtg |
112 |
Q |
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| T |
23859091 |
aatatgactataatatatcaagagtcccaacatggtacacaagtaagctttagacgcgaaaacatgtaccatgcttccttatcatgccttaaatcatgtg |
23859190 |
T |
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| Q |
113 |
tagacacccataaagaaacacaatgaatcaaatgta--tttacat-aacaaataatcaatgaaattgagcatttttagatttgaacttgtgaaccgaaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23859191 |
tagacacccataaagaaacacaatgaatcaaatgtatttttacataaacaaataatcaatgaaattgagcatttttagatttgaacttgtgaaccgaaaa |
23859290 |
T |
|
| Q |
210 |
ggcaattgaaagaatatactttatgaaggnnnnnnnngacaatacacacaaggaaagtaacttagatccaacataaagaaaacttcaactccatcgagtg |
309 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23859291 |
ggcaattgaaagaatatactttatgaaggaaaaaaaagacaatacacacaaggaaagtaacttagatccaacataaagaaaacttcaactccatcgagtg |
23859390 |
T |
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| Q |
310 |
t |
310 |
Q |
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| T |
23859391 |
t |
23859391 |
T |
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