View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3181_low_12 (Length: 314)
Name: NF3181_low_12
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3181_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 8498582 - 8498881
Alignment:
| Q |
1 |
ctcttcttaaagaagtggaaagttggataaggaactttatctggagtgggaatatagctaatagaaaactggtaactgtttcttggaaaa-agctttgta |
99 |
Q |
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| T |
8498582 |
ctcttcttaaagaagtggaaagttggataaggaactttatctggagtgggaatatagctaatagaaaactggtaactgtttcttggaaaaaagctttgta |
8498681 |
T |
|
| Q |
100 |
agccctattctgaaggaggtttgggattaagatcactaattactttgaatgaagccaccaatctgaagattttatgggatctgaagaactctaatgaaga |
199 |
Q |
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| T |
8498682 |
agccctattctgaaggaggtttgggattaagatcactaattactttgaatgaagccaccaatttgaagattttatgggatctgaagaactctaatgaaga |
8498781 |
T |
|
| Q |
200 |
ttcggctttgttgttgagaagtaaagtcttcagaggtaagagggttatcactcatcacattttttcttctctttggagtagcataaaatccgaagtttct |
299 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8498782 |
ttcggctttgttgttgagaagtcaagtcttcagaggtaagagagttatcactcatcacattttttcttctctttggagtagcataaaatccgaagtttct |
8498881 |
T |
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