View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3181_low_14 (Length: 264)
Name: NF3181_low_14
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3181_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 7218447 - 7218675
Alignment:
| Q |
20 |
ctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgt |
119 |
Q |
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| T |
7218447 |
ctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaaacatggatgcttatgactttgtccaaagtgt |
7218546 |
T |
|
| Q |
120 |
tgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacacaattcacatgattcattcatatatatgtacctcataagtgtgaactt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||| |
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| T |
7218547 |
tgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacacaattcacatgattcattc--atatatgtacttaataagtgtgaactt |
7218644 |
T |
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| Q |
220 |
acattattatttcttttttgtagtgatggcc |
250 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7218645 |
acattattatttcttttttgtagtgatggcc |
7218675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 38 - 233
Target Start/End: Complemental strand, 7317598 - 7317403
Alignment:
| Q |
38 |
tggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacat |
137 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||| |||||| || |
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| T |
7317598 |
tggaaagaaaggactgttttgatgtaatgttgattgatgctcatatgccaaacatggatgtttatgactttgtccaacatgttaccctactactcaaaat |
7317499 |
T |
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| Q |
138 |
tcctgtcattagtaagaatttattcaactttacacaattcacatgattcattcatatatatgtacctcataagtgtgaacttacattattatttct |
233 |
Q |
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| T |
7317498 |
tcctgtcattagtaagaatttcttcaactttacacaattcacatgattcattcatatatatgtacttaataagtgtgaacttacattattatttct |
7317403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 7243953 - 7244105
Alignment:
| Q |
20 |
ctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgt |
119 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7243953 |
ctgatgccttgaacttgttggaaagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaaacatggatgcttatgactttgtccaacatgt |
7244052 |
T |
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| Q |
120 |
tgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
172 |
Q |
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| T |
7244053 |
taccctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
7244105 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 35 - 169
Target Start/End: Complemental strand, 7324390 - 7324256
Alignment:
| Q |
35 |
tgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaa |
134 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| || | |||||||||||| |
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| T |
7324390 |
tgttggaaagaaaggactgttatgatgtaatgttgattgatgctcatatgccgaacatggatgtctatgactttgtccaaaatgctaccctacaactcaa |
7324291 |
T |
|
| Q |
135 |
cattcctgtcattagtaagaatttattcaacttta |
169 |
Q |
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||||||||| |||||||||||||| |||||||||| |
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| T |
7324290 |
cattcctgttattagtaagaatttcttcaacttta |
7324256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 8162194 - 8162314
Alignment:
| Q |
51 |
ctgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagt |
150 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||| |||| ||||||||| | ||||||| || ||| |
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| T |
8162194 |
ctgtttcgatgtaatgttgattgatgctcgtatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgctatcagt |
8162293 |
T |
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| Q |
151 |
aagaatttattcaactttaca |
171 |
Q |
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||||||||||| ||||||||| |
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| T |
8162294 |
aagaatttatttaactttaca |
8162314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 7244127 - 7244204
Alignment:
| Q |
175 |
ttcacatgattcattcatatatat---gtacctcataagtgtgaacttacattattatttcttttttgtagtgatggc |
249 |
Q |
| |
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|||| ||||||||||||||||||| || |||| ||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
7244127 |
ttcatatgattcattcatatatatattgttactcagaagtgtggactgacattattatttcttttttgtagtgatggc |
7244204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 7324222 - 7324158
Alignment:
| Q |
185 |
tcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgtagtgatggc |
249 |
Q |
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|||||||||| ||||||| | | ||| ||||||| ||||||||||||||| ||| |||||||||| |
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| T |
7324222 |
tcattcatatttatgtacttaagaagcgtgaactgacattattatttcttatttttagtgatggc |
7324158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 8162379 - 8162417
Alignment:
| Q |
211 |
tgtgaacttacattattatttcttttttgtagtgatggc |
249 |
Q |
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|||||||| |||||||||||| ||||||||||||||||| |
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| T |
8162379 |
tgtgaactcacattattatttgttttttgtagtgatggc |
8162417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 22766444 - 22766295
Alignment:
| Q |
20 |
ctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgt |
119 |
Q |
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|||| ||||| ||| |||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| ||||| ||||| ||| || |
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| T |
22766444 |
ctgaagccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgccaaacatggatgcctatgattttgttcaacatgc |
22766345 |
T |
|
| Q |
120 |
tgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
169 |
Q |
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| | |||||||| |||||||| ||||||||| |||| |||||||||| |
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| T |
22766344 |
taccggtcaactcaatattcctgttattagtaagtatttcttcaacttta |
22766295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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