View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3181_low_16 (Length: 250)
Name: NF3181_low_16
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3181_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33785905 - 33786140
Alignment:
| Q |
1 |
acttgattccattagtttcttctccagcctaatcaaacaaacaacaaatttattaattggttacttcaacatcaaggcattaacaagctattagttgatn |
100 |
Q |
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| T |
33785905 |
acttgattccattagtttcttctccagcctaatcaaacaaacaacaaatttattaattggttacttcaacatcaaggcattaacaagctattagttgata |
33786004 |
T |
|
| Q |
101 |
nnnnnn-cgtgatttggtgattgattttctaaatctgtatcgtgatttaaatgattttttgtccgatttaaagactgatttgcaaaaaatggataaaact |
199 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33786005 |
aaaaaaacgtgatttggtgattgattttctaaatcggtatcgtgatttaaatgattttttgtccgatttaaagactgatttgcaaaaaatggataaaact |
33786104 |
T |
|
| Q |
200 |
atggtcgataatgtttaacatttgtcatttttcggc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33786105 |
atggtcgataatgtttaacatttgtcatttttcggc |
33786140 |
T |
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