View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3181_low_19 (Length: 227)
Name: NF3181_low_19
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3181_low_19 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40403436 - 40403210
Alignment:
| Q |
1 |
cacacaaattagccaaaaatataattgtaattataccatgtacccatatttcaagtgcagtccttttaagtttgcgacttcaaacaaagctgatctccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40403436 |
cacacaaattagccaaaaatataattgtaattatactatgtacccatatttcaagtgccgtccttttaagtttgcgacttcaaacaaagctgatctccat |
40403337 |
T |
|
| Q |
101 |
gctttcagcttctcagagtcctttccaaatttttcttcatgttcatccatagctttttcgtaactatttttcagatgtcttatgtttgttggttccactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
40403336 |
gctttcagcttctcagagtcctttccaaatttttcttcatgttcatccatagctttttcgtaactatttttcagatgtcttatggttgttggttccattt |
40403237 |
T |
|
| Q |
201 |
tgtaaaaaataggccaaacaagttggt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
40403236 |
tgtaaaaaataggccaaacaagttggt |
40403210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 39619548 - 39619444
Alignment:
| Q |
78 |
cttcaaacaaagctgatctccatgctttcagcttctcagagtcctttccaaatttttcttcatgttcatccatagctttttcgtaactatttttcagatg |
177 |
Q |
| |
|
||||| |||| |||| | |||||||||| | || |||||||| |||||||| || | ||||| ||| |||| ||||| ||||||||||||||| |||| |
|
|
| T |
39619548 |
cttcagacaatgctgttatccatgcttttacattttcagagtcttttccaaacttaacctcatgatcaaccatggctttctcgtaactatttttctgatg |
39619449 |
T |
|
| Q |
178 |
tctta |
182 |
Q |
| |
|
||||| |
|
|
| T |
39619448 |
tctta |
39619444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 219
Target Start/End: Original strand, 40256675 - 40256826
Alignment:
| Q |
68 |
aagtttgcgacttcaaacaaagctgatctccatgctttcagcttctcagagtcctttccaaatttttcttcatgttcatccatagctttttcgtaactat |
167 |
Q |
| |
|
||||| || |||| ||||||||||||||||||| || | ||||||| | || |||||||| || | |||||||||| ||| ||||| | ||||||| |
|
|
| T |
40256675 |
aagttggcaacttgaaacaaagctgatctccatttttgtatcttctcataatcatttccaaaattattttcatgttcagtcattgctttaccataactat |
40256774 |
T |
|
| Q |
168 |
ttttcagatgtcttatgtttgttggttccactttgtaaaaaataggccaaac |
219 |
Q |
| |
|
| ||| ||| |||| | || ||| ||||||||||||||||| |||||||| |
|
|
| T |
40256775 |
tcttctgataccttacatctgatggctccactttgtaaaaaattggccaaac |
40256826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University