View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3181_low_3 (Length: 575)

Name: NF3181_low_3
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3181_low_3
NF3181_low_3
[»] chr7 (3 HSPs)
chr7 (8-205)||(8547960-8548157)
chr7 (271-369)||(8548241-8548340)
chr7 (522-562)||(46364743-46364783)
[»] chr3 (16 HSPs)
chr3 (272-562)||(54763552-54763844)
chr3 (272-400)||(54765515-54765644)
chr3 (437-562)||(54764630-54764755)
chr3 (272-400)||(54764303-54764432)
chr3 (435-530)||(54764047-54764141)
chr3 (350-496)||(1317496-1317643)
chr3 (307-359)||(54764962-54765014)
chr3 (499-562)||(54765239-54765303)
chr3 (440-554)||(54765800-54765913)
chr3 (289-361)||(1317867-1317939)
chr3 (435-486)||(54765342-54765393)
chr3 (321-363)||(49827595-49827637)
chr3 (517-562)||(1317478-1317523)
chr3 (443-560)||(49827273-49827389)
chr3 (518-562)||(4358573-4358617)
chr3 (522-562)||(26059979-26060019)
[»] chr2 (7 HSPs)
chr2 (272-562)||(1076502-1076794)
chr2 (272-400)||(1077281-1077410)
chr2 (272-359)||(1077907-1077994)
chr2 (437-562)||(1077609-1077734)
chr2 (443-562)||(1076993-1077111)
chr2 (457-554)||(1078149-1078245)
chr2 (388-429)||(1077496-1077537)
[»] chr5 (6 HSPs)
chr5 (274-561)||(27432971-27433269)
chr5 (444-562)||(27433988-27434104)
chr5 (451-560)||(13549404-13549512)
chr5 (457-564)||(27433224-27433328)
chr5 (305-406)||(43250540-43250642)
chr5 (289-361)||(13549603-13549675)
[»] chr4 (9 HSPs)
chr4 (272-455)||(54960791-54960975)
chr4 (443-562)||(54962274-54962392)
chr4 (305-478)||(54962554-54962728)
chr4 (499-562)||(54961336-54961399)
chr4 (305-355)||(54962236-54962286)
chr4 (443-562)||(54960930-54961047)
chr4 (289-362)||(54961932-54962005)
chr4 (518-562)||(18122469-18122513)
chr4 (522-562)||(36032302-36032342)
[»] scaffold0206 (4 HSPs)
scaffold0206 (272-421)||(10643-10793)
scaffold0206 (438-562)||(11228-11352)
scaffold0206 (436-562)||(10564-10688)
scaffold0206 (305-359)||(11340-11394)
[»] chr1 (9 HSPs)
chr1 (499-562)||(20201248-20201311)
chr1 (321-403)||(30219122-30219205)
chr1 (288-406)||(20202299-20202417)
chr1 (305-362)||(20201203-20201260)
chr1 (321-362)||(30219566-30219607)
chr1 (522-562)||(4291405-4291445)
chr1 (469-560)||(22522028-22522116)
chr1 (522-562)||(37398410-37398450)
chr1 (522-562)||(41778155-41778195)
[»] chr6 (9 HSPs)
chr6 (499-562)||(30696191-30696254)
chr6 (499-560)||(30695946-30696007)
chr6 (510-562)||(5324034-5324086)
chr6 (276-406)||(30696212-30696344)
chr6 (495-557)||(18754290-18754352)
chr6 (457-562)||(5323788-5323892)
chr6 (321-421)||(30693293-30693394)
chr6 (459-551)||(5323007-5323098)
chr6 (308-411)||(5324535-5324638)
[»] scaffold0517 (1 HSPs)
scaffold0517 (522-562)||(9198-9238)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 8547960 - 8548157
Alignment:
Q  8 cttggttttttacttgagtgtgaatgaatgtgaaaacgaaagttttggatttttcttcttgatttcaactcacacggactgaagtgtccaaatgtagttt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  8547960 cttggttttttacttgagtgtgaatgaatgtgaaaacgaaagttttggatttttgttcttgatttcaactcacacggactgaagtgtcaaaatgtagttt 8548059  T
Q  108 tctttgaaatcttgcgctctttgtggtgttgtaagaatgcgctcaaaacaattttttataggcaagattttgtagcaaaagtaaaagagtgaattggc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||| |||||||||||||||||    
T  8548060 tctttgaaatcttgcgctctttgtggtgttgtaagaatgcgctcaaaacaattctttataaacaagattttgtagcaaaaataaaagagtgaattggc 8548157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 271 - 369
Target Start/End: Original strand, 8548241 - 8548340
Alignment:
Q  271 gcgatattttagacaatctcacttatctcatgtcttttagttgat-gacaattcaatatcattgtaaaattgaagcaaagtgatattctaaatgtttaaa 369  Q
    |||||||||||||| |||||| |||||| ||||||||||| |||| |||| || |||||||||||||||||||||| |||||||||||||||||| ||||    
T  8548241 gcgatattttagacgatctcagttatcttatgtcttttaggtgatagacagtttaatatcattgtaaaattgaagcgaagtgatattctaaatgtataaa 8548340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 562
Target Start/End: Original strand, 46364743 - 46364783
Alignment:
Q  522 tttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    ||||| |||||| ||||||||||||||||||||||| ||||    
T  46364743 tttagtcaatgttcatttatcccgtgcattttagtttatga 46364783  T

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Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 272 - 562
Target Start/End: Complemental strand, 54763844 - 54763552
Alignment:
Q  272 cgatattttagacaatctcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaat 370  Q
    |||||||||| ||||||||||| ||||| ||  ||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||  || || |||||    
T  54763844 cgatattttatacaatctcact-atctcgtgcattttagttgatgacagttctatatcattgtaaaatttaagcgaagtgatattctggatagtataaat 54763746  T
Q  371 attttatcacaaacaattttttataaatgacaacttatcccaggtatcaaaagttaattataccg-tgtcaatttatctt---gtacatatgagttaatt 466  Q
    |||||||||  ||||| ||||||||||||||||||| | |||||||||||| |||||||    || ||||||||||||||   |||||| ||||||||||    
T  54763745 attttatcatgaacaaatttttataaatgacaacttgttccaggtatcaaa-gttaatttagtcgatgtcaatttatcttcttgtacatttgagttaatt 54763647  T
Q  467 ctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    |||||||||||| || || | |||||||||| |||||||||||||||||| || |||||||||||||||| ||||| |||||||||||||||||||    
T  54763646 ctgaaattttaggcattgcccacttctcccc-tgcattttatatatttacgaatttttagacaatgtccacttatctcgtgcattttagttgatga 54763552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 272 - 400
Target Start/End: Complemental strand, 54765644 - 54765515
Alignment:
Q  272 cgatattttagacaatctcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaat 370  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| || ||  |||     
T  54765644 cgatattttatacaatcgcacttatctcatgtattttagttgatgacagttcaatatcattgtagaattgaaacgaagtgatattctagatagtaaaaac 54765545  T
Q  371 attttatcacaaacaattttttataaatga 400  Q
    |||||||||  ||||| | |||||||||||    
T  54765544 attttatcatgaacaaatatttataaatga 54765515  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 437 - 562
Target Start/End: Complemental strand, 54764755 - 54764630
Alignment:
Q  437 gtcaatttatcttgtacatatgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtcca 536  Q
    ||||| ||||||||||||| |||||||||| |||||||| |||||||| |  ||||| ||| ||||||| |||||||||| |||||||| |||| |||||    
T  54764755 gtcaacttatcttgtacatttgagttaattatgaaatttaagtcaatgccctcttct-cccatgcatttgatatatttacgaaattttaaacaacgtcca 54764657  T
Q  537 tttatcc-cgtgcattttagttgatga 562  Q
    |||| || |||| ||||||||||||||    
T  54764656 tttacccgcgtgtattttagttgatga 54764630  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 272 - 400
Target Start/End: Complemental strand, 54764432 - 54764303
Alignment:
Q  272 cgatattttagacaatctcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaat 370  Q
    |||||||||| |||||| ||||||  || ||| ||||||||||||||| |||||||||||| || ||||||||| ||||||||||||| || || ||||     
T  54764432 cgatattttatacaatcacacttacatcgtgtattttagttgatgacagttcaatatcattatagaattgaagcgaagtgatattctagatagtataaac 54764333  T
Q  371 attttatcacaaacaattttttataaatga 400  Q
    |||||||||  ||||| | |||||||||||    
T  54764332 attttatcaggaacaaatatttataaatga 54764303  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 435 - 530
Target Start/End: Complemental strand, 54764141 - 54764047
Alignment:
Q  435 gtgtcaatttatcttgtacatatgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaa 530  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||||||||| |   |||| ||| |||||||||||||||||| |||||||| ||||    
T  54764141 gtgtcaacttatcttgtacatttgagttaattatgaaattttagtcaatgcccttttct-cccatgcattttatatatttacgaaattttatacaa 54764047  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 496
Target Start/End: Complemental strand, 1317643 - 1317496
Alignment:
Q  350 tgatattctaaat-gtttaaatattttatcacaaacaattttttataaatgacaacttatcccaggtatcaaaagttaatt-ataccgtgtcaatttatc 447  Q
    ||||||||||||| || ||||| ||||||||  ||||||||| ||||||||| ||||| ||||| |||||||| |||| || |  | ||||||| |||||    
T  1317643 tgatattctaaatagtataaatgttttatcagcaacaattttgtataaatgaaaacttgtcccatgtatcaaa-gttagtttagtcagtgtcaacttatc 1317545  T
Q  448 ttgtacatatgagttaattctgaaattttagtcaatgtctacttctccc 496  Q
     | ||||| |||||||||||| ||||||||| ||||| |||||| ||||    
T  1317544 atttacatttgagttaattctaaaattttagacaatgcctacttatccc 1317496  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 54765014 - 54764962
Alignment:
Q  307 ttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattcta 359  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  54765014 ttagttgatgacaattcaatatcattgtagaattgaagcgaagtgatattcta 54764962  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 499 - 562
Target Start/End: Complemental strand, 54765303 - 54765239
Alignment:
Q  499 tgcattttatatatttacaaaattttagacaatgtccatttat-cccgtgcattttagttgatga 562  Q
    |||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||    
T  54765303 tgcattttatatatttacgaaattttaaacaacgtccatttatccccgtgcattttagttgatga 54765239  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 440 - 554
Target Start/End: Complemental strand, 54765913 - 54765800
Alignment:
Q  440 aatttatcttgtacatatgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccattt 539  Q
    ||||||||  || ||| ||||||| ||||||||||||| ||||||    ||||||||  |||||||||| ||||||| | |||||||||||  |||||||    
T  54765913 aatttatcccgtgcatttgagttacttctgaaattttactcaatgctcgcttctccca-tgcattttatttatttacgatattttagacaacatccattt 54765815  T
Q  540 atcccgtgcatttta 554  Q
    ||||| |||||||||    
T  54765814 atcccatgcatttta 54765800  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 1317939 - 1317867
Alignment:
Q  289 tcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaa 361  Q
    |||||||| || ||| ||||||||||||| | |||||||||||||||||||| ||| || || ||||||||||    
T  1317939 tcacttatgtcgtgtattttagttgatgatagttcaatatcattgtaaaatttaagtaatgtcatattctaaa 1317867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 486
Target Start/End: Complemental strand, 54765393 - 54765342
Alignment:
Q  435 gtgtcaatttatcttgtacatatgagttaattctgaaattttagtcaatgtc 486  Q
    ||||||| |||||| |||||| ||||||| || |||||||||||||||||||    
T  54765393 gtgtcaacttatctagtacatttgagttagttatgaaattttagtcaatgtc 54765342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 49827637 - 49827595
Alignment:
Q  321 ttcaatatcattgtaaaattgaagcaaagtgatattctaaatg 363  Q
    ||||||||||||||| ||||||||  |||||||||||||||||    
T  49827637 ttcaatatcattgtagaattgaagtgaagtgatattctaaatg 49827595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 562
Target Start/End: Complemental strand, 1317523 - 1317478
Alignment:
Q  517 aaaattttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    |||||||||||||||| | | ||||||| |||||||||||||||||    
T  1317523 aaaattttagacaatgcctacttatcccatgcattttagttgatga 1317478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 560
Target Start/End: Complemental strand, 49827389 - 49827273
Alignment:
Q  443 ttatcttgtacatatgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatc 542  Q
    ||||| ||| ||||||||||| |||| ||||||||||||||| | |||||| ||  ||||||| |  ||| ||| ||| ||| | |||||  ||  ||||    
T  49827389 ttatcatgtgcatatgagttatttctaaaattttagtcaatgcccacttct-cctatgcatttcacctatatacgaaacttttgtcaatgctcacatatc 49827291  T
Q  543 ccgtgcattttagttgat 560  Q
    ||||||||||||||||||    
T  49827290 ccgtgcattttagttgat 49827273  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 562
Target Start/End: Complemental strand, 4358617 - 4358573
Alignment:
Q  518 aaattttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    |||| |||| |||||| ||||||||||||||||||||||| ||||    
T  4358617 aaatattagtcaatgttcatttatcccgtgcattttagtttatga 4358573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 562
Target Start/End: Original strand, 26059979 - 26060019
Alignment:
Q  522 tttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    ||||| |||||| ||||||||||||||||||||||| ||||    
T  26059979 tttagtcaatgttcatttatcccgtgcattttagtttatga 26060019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 4e-55; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 272 - 562
Target Start/End: Complemental strand, 1076794 - 1076502
Alignment:
Q  272 cgatattttagacaatctcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaat 370  Q
    |||||||||| ||||||||||| ||||| |   ||||||||||||||| ||| |||||||||||||||| |||| |||||||||| |  || || |||||    
T  1076794 cgatattttatacaatctcact-atctctttcattttagttgatgacagttctatatcattgtaaaatttaagcgaagtgatattatggatagtataaat 1076696  T
Q  371 attttatcacaaacaattttttataaatgacaacttatcccaggtatcaaaagttaattataccg-tgtcaatttat---cttgtacatatgagttaatt 466  Q
    |||||||||  ||||| |||||||||||| |||||| | |||||||||||| |||||||    || |||||||||||   ||||||||| ||||||||||    
T  1076695 attttatcatgaacaaatttttataaatggcaacttgttccaggtatcaaa-gttaatttagtcgatgtcaatttattttcttgtacatttgagttaatt 1076597  T
Q  467 ctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    || ||||||||| || || | |||||||||| |||||||||||||||||| || |||||||||| ||||||||||| |||||||||||||||||||    
T  1076596 ctaaaattttaggcattgcccacttctcccc-tgcattttatatatttacgaatttttagacaacgtccatttatctcgtgcattttagttgatga 1076502  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 272 - 400
Target Start/End: Complemental strand, 1077410 - 1077281
Alignment:
Q  272 cgatattttagacaatctcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaat 370  Q
    |||||||||| |||||| |||||| ||| ||| ||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| || || ||||     
T  1077410 cgatattttatacaatcacacttacctcgtgtattttagttgatgacagttcaatatcattgtagaattgaagcgaagtgatattctagatagtataaac 1077311  T
Q  371 attttatcacaaacaattttttataaatga 400  Q
    ||||||||   ||||| | |||||||||||    
T  1077310 attttatctggaacaaatatttataaatga 1077281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 272 - 359
Target Start/End: Complemental strand, 1077994 - 1077907
Alignment:
Q  272 cgatattttagacaatctcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattcta 359  Q
    |||||||||| |||||| |||||||||| | | ||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  1077994 cgatattttatacaatcacacttatctcgtatattttagttgatgacagttcaatatcattgtagaattgaagcgaagtgatattcta 1077907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 437 - 562
Target Start/End: Complemental strand, 1077734 - 1077609
Alignment:
Q  437 gtcaatttatcttgtacatatgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtcca 536  Q
    ||||| ||||||||||||| |||||||||| |||||||| |||||||| |   |||| ||| ||||||| |||||||||  |||||||| |||| |||||    
T  1077734 gtcaacttatcttgtacatttgagttaattatgaaatttaagtcaatgcccttttct-cccatgcatttgatatatttatgaaattttaaacaacgtcca 1077636  T
Q  537 tttatcc-cgtgcattttagttgatga 562  Q
    ||||||| |||| ||||||||||||||    
T  1077635 tttatccgcgtgtattttagttgatga 1077609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 443 - 562
Target Start/End: Complemental strand, 1077111 - 1076993
Alignment:
Q  443 ttatcttgtacatatgagttaattctgaaattttagtcaatgtctacttctc-cccgtgcattttatatatttacaaaattttagacaatgtccatttat 541  Q
    ||||||| ||||| |||||||||| ||||||||||||||||| |  |||||| ||| |||| ||||||||||||| |||||||| |||| ||| ||||||    
T  1077111 ttatcttatacatttgagttaattatgaaattttagtcaatgcc--cttctctcccatgca-tttatatatttacgaaattttatacaacgtctatttat 1077015  T
Q  542 -cccgtgcattttagttgatga 562  Q
     |||||| ||||||||||||||    
T  1077014 ccccgtgtattttagttgatga 1076993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 457 - 554
Target Start/End: Complemental strand, 1078245 - 1078149
Alignment:
Q  457 tgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcatttta 554  Q
    ||||||| ||||||||||||| |||||| |  ||||||||  |||||||||| ||||||| | |||||| ||||  |||||||||||| |||||||||    
T  1078245 tgagttacttctgaaattttactcaatgcccgcttctccca-tgcattttatttatttacgatattttaaacaacatccatttatcccatgcatttta 1078149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 1077537 - 1077496
Alignment:
Q  388 tttttataaatgacaacttatcccaggtatcaaaagttaatt 429  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||    
T  1077537 tttttataaataacaacttctcccatgtatcaaaagttaatt 1077496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 274 - 561
Target Start/End: Complemental strand, 27433269 - 27432971
Alignment:
Q  274 atattttagacaatctcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaatgtt-taaatat 372  Q
    |||||||||||||| ||| ||||||| ||  |||||||||||||  | |||||||||||||  |||||||||||||||||||||||||   | ||||       
T  27433269 atattttagacaatttcatttatctcgtgcattttagttgatgatgaatcaatatcattgttgaattgaagcaaagtgatattctaaacaatataaacga 27433170  T
Q  373 tttatcacaaacaatttttt-----------ataaatgacaacttatcccaggtatcaaaagttaattataccgt-gtcaatttatcttgtacatatgag 460  Q
    |||||||  || | ||||||           |||||||||||||| |||   |||||||| |||||||   || | |||||||||||||| |||| ||||    
T  27433169 tttatcatgaatagtttttttttttttatatataaatgacaacttgtcctgagtatcaaa-gttaatttagccatagtcaatttatcttggacatttgag 27433071  T
Q  461 ttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcattttagttgat 560  Q
    |||||| |||||||||| | ||||   |||||||||  | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  27433070 ttaattttgaaattttaattaatgctcacttctccca-tacattttatatatttacgaaattttagacaatgtccacttatcccgtgcattttagttgat 27432972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 562
Target Start/End: Complemental strand, 27434104 - 27433988
Alignment:
Q  444 tatcttgtacatatgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatcc 543  Q
    |||| ||| ||| ||||||| || |||||||||| |||||| | |||||||||  |||||||||| ||||||||| |||||||||||||| |||||| ||    
T  27434104 tatcatgtgcatttgagttacttatgaaattttactcaatgcccacttctccca-tgcattttatttatttacaatattttagacaatgtacattta-cc 27434007  T
Q  544 cgtgcattttagttgatga 562  Q
    |||||||||||||||||||    
T  27434006 cgtgcattttagttgatga 27433988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 451 - 560
Target Start/End: Complemental strand, 13549512 - 13549404
Alignment:
Q  451 tacatatgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcat 550  Q
    ||||||||| || ||| ||||||| |||| |||| | ||||||| |  |||||||||| ||||||| | ||| ||||||||||||||||||||| |||||    
T  13549512 tacatatgaattgattttgaaattatagtaaatgcccacttctctca-tgcattttatttatttacgatattatagacaatgtccatttatcccatgcat 13549414  T
Q  551 tttagttgat 560  Q
    ||||||||||    
T  13549413 tttagttgat 13549404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 457 - 564
Target Start/End: Complemental strand, 27433328 - 27433224
Alignment:
Q  457 tgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcattttagt 556  Q
    ||||||| ||||||||| ||||||||||| | ||| ||    |||||||||| ||||||||| |||||||||||| || ||||||| |||||||||||||    
T  27433328 tgagttacttctgaaatcttagtcaatgtttgcttatctt--tgcattttatttatttacaatattttagacaatttc-atttatctcgtgcattttagt 27433232  T
Q  557 tgatgatg 564  Q
    ||||||||    
T  27433231 tgatgatg 27433224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 406
Target Start/End: Complemental strand, 43250642 - 43250540
Alignment:
Q  305 ttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaatattttatcacaaacaattttttataaatgacaa 403  Q
    |||||||||||||   ||| ||||| ||||| ||||||||  | |||||||||||||| ||  ||| |||||| ||  ||||||||||||||||||||||    
T  43250642 ttttagttgatgaaggttcgatatctttgtagaattgaagtgaggtgatattctaaatagtagaaacattttagcaagaacaattttttataaatgacaa 43250543  T
Q  404 ctt 406  Q
    |||    
T  43250542 ctt 43250540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 13549675 - 13549603
Alignment:
Q  289 tcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaa 361  Q
    ||||||||| ||||| ||||||| |||||  ||||||||||||| || ||||||||    |||||||||||||    
T  13549675 tcacttatcccatgtattttagtcgatgatgattcaatatcattttagaattgaagtgtggtgatattctaaa 13549603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 272 - 455
Target Start/End: Complemental strand, 54960975 - 54960791
Alignment:
Q  272 cgatattttagacaatctcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaat 370  Q
    ||||||| ||||||||||||||||| |  ||  ||||||||||||||| |||||||||||| || ||||| ||||| |||||||||||||| || ||||     
T  54960975 cgatattatagacaatctcacttatattgtgcattttagttgatgacagttcaatatcattatagaattggagcaaggtgatattctaaatagtataaac 54960876  T
Q  371 attttatcacaaacaattttttataaatgacaacttatcccaggtatcaaaagttaa-ttataccgtgtcaatttatcttgtacat 455  Q
     |||||||| ||||||| |||||||||||||||||| ||  ||||||| |||||||| |||  | |||||| ||||||||||||||    
T  54960875 gttttatcataaacaatattttataaatgacaacttgtcttaggtatc-aaagttaatttagtcagtgtcattttatcttgtacat 54960791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 443 - 562
Target Start/End: Complemental strand, 54962392 - 54962274
Alignment:
Q  443 ttatcttgtacatatgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatc 542  Q
    |||||| |||||| ||||||| || ||||||||| || |||| | ||||||| |  |||||||||  ||||||||||||| ||||||||||||||||||     
T  54962392 ttatctcgtacatttgagttacttttgaaatttttgttaatgcccacttctctca-tgcattttagttatttacaaaattgtagacaatgtccatttata 54962294  T
Q  543 ccgtgcattttagttgatga 562  Q
     ||| |||||||||||||||    
T  54962293 tcgttcattttagttgatga 54962274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 305 - 478
Target Start/End: Complemental strand, 54962728 - 54962554
Alignment:
Q  305 ttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaatattttatcacaaacaattttttataaatgacaa 403  Q
    |||||||||||||| | ||||| |||||||| ||||||||  | ||||||||||| || ||  |||  |||||| |  ||  |||||| |||||||||||    
T  54962728 ttttagttgatgacgaatcaatgtcattgtagaattgaagtgaggtgatattctacatagtacaaacgttttattaagaattatttttaataaatgacaa 54962629  T
Q  404 cttatcccaggtatcaaaagttaatt-ataccgtgtcaatttatcttgtacatatgagttaattctgaaattttag 478  Q
    | | ||||  |||||||| ||||||| |  | |||||| |||||||||||||| ||||||||||||||||||||||    
T  54962628 catgtcccgtgtatcaaa-gttaatttagtcggtgtcagtttatcttgtacatttgagttaattctgaaattttag 54962554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 499 - 562
Target Start/End: Complemental strand, 54961399 - 54961336
Alignment:
Q  499 tgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    |||||||||| ||||||| |  || ||||||||||||||||||||| |||||||||||||||||    
T  54961399 tgcattttatttatttacgatgttatagacaatgtccatttatcccatgcattttagttgatga 54961336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 54962286 - 54962236
Alignment:
Q  305 ttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatat 355  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||||    
T  54962286 ttttagttgatgacggttcaatatcattgtagaattgaagcaaggtgatat 54962236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 562
Target Start/End: Complemental strand, 54961047 - 54960930
Alignment:
Q  443 ttatcttgtacatatgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatc 542  Q
    |||||| || ||| ||||||| |||||||||||||||||||| |   || | |||||||||||||| ||||||| | ||| |||||||| | || ||||     
T  54961047 ttatctcgtgcatttgagttacttctgaaattttagtcaatg-cccgtttttcccgtgcattttatttatttacgatattatagacaatct-cacttata 54960950  T
Q  543 ccgtgcattttagttgatga 562  Q
      ||||||||||||||||||    
T  54960949 ttgtgcattttagttgatga 54960930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 54962005 - 54961932
Alignment:
Q  289 tcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat 362  Q
    ||||||||| ||||| ||||||| |||||   |||||| |||||||| ||||||||  | ||||||||||||||    
T  54962005 tcacttatcccatgtattttagtcgatgatggttcaatgtcattgtagaattgaagtgatgtgatattctaaat 54961932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 562
Target Start/End: Complemental strand, 18122513 - 18122469
Alignment:
Q  518 aaattttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    |||| |||| |||||| ||||||||||||||||||||||| ||||    
T  18122513 aaatattagtcaatgttcatttatcccgtgcattttagtttatga 18122469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 562
Target Start/End: Original strand, 36032302 - 36032342
Alignment:
Q  522 tttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    ||||| |||||| ||||||||||||||||||||||| ||||    
T  36032302 tttagtcaatgttcatttatcccgtgcattttagtttatga 36032342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 272 - 421
Target Start/End: Original strand, 10643 - 10793
Alignment:
Q  272 cgatattttagacaatctcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaat 370  Q
    |||||||||| |||||| |||| ||||| ||| ||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| || || ||||     
T  10643 cgatattttatacaatcccactcatctcgtgtattttagttgatgacagttcaatatcattgtagaattgaagcgaagtgatattctagatagtataaac 10742  T
Q  371 attttatcacaaacaattttttataaatgacaacttatcccaggtatcaaa 421  Q
    |||||||||  | ||| ||||||||||| ||||||| |  |||||||||||    
T  10743 attttatcaggagcaaatttttataaataacaacttgtttcaggtatcaaa 10793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 438 - 562
Target Start/End: Original strand, 11228 - 11352
Alignment:
Q  438 tcaatttatcttgtacatatgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccat 537  Q
    |||| ||||||||||||| |||||||||| |||||||| |||||||| |   |||| ||| |||||||||||||||||  |||||||| ||| |||||||    
T  11228 tcaacttatcttgtacatttgagttaattatgaaatttgagtcaatgcccttttct-cccatgcattttatatatttatgaaattttaaacattgtccat 11326  T
Q  538 ttat-cccgtgcattttagttgatga 562  Q
    |||| ||| | |||||||||||||||    
T  11327 ttatccccttacattttagttgatga 11352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 562
Target Start/End: Original strand, 10564 - 10688
Alignment:
Q  436 tgtcaatttatcttgtacatatgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtcc 535  Q
    |||||| ||||||||||||| ||||||| || ||||||||| ||||||||   |||||  |  |||||||||| ||||||| | |||||| |||||  ||    
T  10564 tgtcaacttatcttgtacatttgagttacttttgaaatttttgtcaatgttcgcttct-tctatgcattttatttatttacgatattttatacaat-ccc 10661  T
Q  536 atttatcccgtgcattttagttgatga 562  Q
    | | ||| |||| ||||||||||||||    
T  10662 actcatctcgtgtattttagttgatga 10688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 11340 - 11394
Alignment:
Q  305 ttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattcta 359  Q
    |||||||||||||   || |||||||||||| ||||||||| |||||||||||||    
T  11340 ttttagttgatgaatgtttaatatcattgtagaattgaagcgaagtgatattcta 11394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 499 - 562
Target Start/End: Complemental strand, 20201311 - 20201248
Alignment:
Q  499 tgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    |||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20201311 tgcattttagttatttacaaaattttagacaatgtccatttattccgtgcattttagttgatga 20201248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 30219205 - 30219122
Alignment:
Q  321 ttcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaatattttatcacaaacaattttttataaatgacaa 403  Q
    |||||||| |||||| || |||||  |||||||||||||||| || |||| |||||| ||  ||||||||||||||||||||||    
T  30219205 ttcaatataattgtagaaatgaagtgaagtgatattctaaatagtataaacattttaacatgaacaattttttataaatgacaa 30219122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 406
Target Start/End: Complemental strand, 20202417 - 20202299
Alignment:
Q  288 ctcacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaatattttatcacaaacaa 386  Q
    ||||||||| || ||| |||||||| ||||   |||||||||||| || ||||||| ||| ||||||||||| || || ||||  ||||||||  |||||    
T  20202417 ctcacttatttcgtgtattttagtttatgagggttcaatatcattctagaattgaatcaatgtgatattctagatagtgtaaacgttttatcaagaacaa 20202318  T
Q  387 ttttttataaatgacaactt 406  Q
     ||||||| |||||||||||    
T  20202317 -tttttattaatgacaactt 20202299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 20201260 - 20201203
Alignment:
Q  305 ttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat 362  Q
    ||||||||||||| | |||||| |||||||  ||||||||| | ||||||||||||||    
T  20201260 ttttagttgatgagagttcaatgtcattgtcgaattgaagcgaggtgatattctaaat 20201203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 30219607 - 30219566
Alignment:
Q  321 ttcaatatcattgtaaaattgaagcaaagtgatattctaaat 362  Q
    ||||||||||||||| ||||||||  ||||||||||||||||    
T  30219607 ttcaatatcattgtagaattgaagtgaagtgatattctaaat 30219566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 562
Target Start/End: Original strand, 4291405 - 4291445
Alignment:
Q  522 tttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    ||||| |||||| ||||||||||||||||||||||| ||||    
T  4291405 tttagtcaatgttcatttatcccgtgcattttagtttatga 4291445  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 560
Target Start/End: Complemental strand, 22522116 - 22522028
Alignment:
Q  469 gaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcattttagttgat 560  Q
    |||||||||||||||| |||||||| ||||||||||| || ||| |||  |||||||  ||||||| | ||||  ||| |||||||||||||    
T  22522116 gaaattttagtcaatgcctacttct-cccgtgcatttaatctatctac--aattttattcaatgtctacttatgtcgtacattttagttgat 22522028  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 562
Target Start/End: Complemental strand, 37398450 - 37398410
Alignment:
Q  522 tttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    ||||| |||||| ||||||||||||||||||||||| ||||    
T  37398450 tttagtcaatgttcatttatcccgtgcattttagtttatga 37398410  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 562
Target Start/End: Complemental strand, 41778195 - 41778155
Alignment:
Q  522 tttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    ||||| |||||| ||||||||||||||||||||||| ||||    
T  41778195 tttagtcaatgttcatttatcccgtgcattttagtttatga 41778155  T

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Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 499 - 562
Target Start/End: Original strand, 30696191 - 30696254
Alignment:
Q  499 tgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    |||||||||  |||||||||||||||||||||| | || |||||||||||||||||||||||||    
T  30696191 tgcattttagttatttacaaaattttagacaatatgcacttatcccgtgcattttagttgatga 30696254  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 499 - 560
Target Start/End: Original strand, 30695946 - 30696007
Alignment:
Q  499 tgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcattttagttgat 560  Q
    |||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| ||||||    
T  30695946 tgcattttatttatttacgatattatagacaatgtccatttatcccgtgcattttggttgat 30696007  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 510 - 562
Target Start/End: Complemental strand, 5324086 - 5324034
Alignment:
Q  510 tatttacaaaattttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  5324086 tattttcaatattttagacaatgttcatttatcccgtgcattttagttaatga 5324034  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 406
Target Start/End: Original strand, 30696212 - 30696344
Alignment:
Q  276 attttagacaatct-cacttatctcatgtcttttagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaatatt 373  Q
    |||||||||||| | |||||||| | ||  ||||||||||||||  |||| | |||||||| ||||||||| | |||||||| |||||  | ||||| ||    
T  30696212 attttagacaatatgcacttatcccgtgcattttagttgatgacggttcactgtcattgtagaattgaagcgacgtgatattataaataatataaatgtt 30696311  T
Q  374 ttatcacaaacaattttttataaatgacaactt 406  Q
    || |||  | ||||||||||||||||| |||||    
T  30696312 ttctcaagatcaattttttataaatgaaaactt 30696344  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 557
Target Start/End: Original strand, 18754290 - 18754352
Alignment:
Q  495 cccgtgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcattttagtt 557  Q
    |||||| ||||||| |||||   ||| ||||| |||||| |||||||||||||||||||||||    
T  18754290 cccgtgtattttatttatttctgaaagtttagtcaatgttcatttatcccgtgcattttagtt 18754352  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 562
Target Start/End: Complemental strand, 5323892 - 5323788
Alignment:
Q  457 tgagttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcattttagt 556  Q
    ||||||| || |||| |||| ||||||| | |||||||||  |||||||||  || |||||||||||||||||||  |||  |||||||| |||| ||||    
T  5323892 tgagttacttttgaattttttgtcaatgcccacttctccca-tgcattttagttagttacaaaattttagacaattcccacgtatcccgtccattatagt 5323794  T
Q  557 tgatga 562  Q
    | ||||    
T  5323793 taatga 5323788  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 421
Target Start/End: Original strand, 30693293 - 30693394
Alignment:
Q  321 ttcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaatattttatcacaaacaattttttataaatgacaacttatcccaggtatca 419  Q
    ||||||| |||| || ||||||||| | |||||||||||||| || ||||   |||||||  ||||||||||||||||||| || || ||||  ||||||    
T  30693293 ttcaataccattttagaattgaagcgatgtgatattctaaatagtataaacgctttatcaagaacaattttttataaatgagaatttgtcccgcgtatca 30693392  T
Q  420 aa 421  Q
    ||    
T  30693393 aa 30693394  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 551
Target Start/End: Complemental strand, 5323098 - 5323007
Alignment:
Q  459 agttaattctgaaattttagtcaatgtctacttctccccgtgcattttatatatttacaaaattttagacaatgtccatttatcccgtgcatt 551  Q
    |||||||| |||| |||||||||||| |  ||||||||  |||||||||| ||||||  | ||  || ||||||| |||||||||||||||||    
T  5323098 agttaattttgaacttttagtcaatgcccgcttctccca-tgcattttatttatttatgatatagtaaacaatgttcatttatcccgtgcatt 5323007  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 411
Target Start/End: Complemental strand, 5324638 - 5324535
Alignment:
Q  308 tagttgatgacaattcaatatcattgtaaaattgaagcaaagtgatattctaaat-gtttaaatattttatcacaaacaattttttataaatgacaactt 406  Q
    ||||||||||  ||||||||||||| |||||||||||  |  ||||| ||||||| || ||||   |||||||| |||||  |||| |||||||||||||    
T  5324638 tagttgatgaggattcaatatcattttaaaattgaagtgagatgatactctaaatagtataaacgctttatcacgaacaa-attttgtaaatgacaactt 5324540  T
Q  407 atccc 411  Q
    |||||    
T  5324539 atccc 5324535  T

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Target: scaffold0517 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 562
Target Start/End: Original strand, 9198 - 9238
Alignment:
Q  522 tttagacaatgtccatttatcccgtgcattttagttgatga 562  Q
    ||||| |||||| ||||||||||||||||||||||| ||||    
T  9198 tttagtcaatgttcatttatcccgtgcattttagtttatga 9238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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