View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3181_low_4 (Length: 435)
Name: NF3181_low_4
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3181_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 29650012 - 29650414
Alignment:
| Q |
18 |
caacatatatcttcctctcagcaacatgatgaaactcatttattatatagtatatgactctaagatggataaattcttgtgttgtaagtaacatatacat |
117 |
Q |
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| T |
29650012 |
caacatatatcttcctctcagcaacatgatgaaactcatttattatatagtatatgactctaagatggataaattcttgtgttgtaagtaacatatacat |
29650111 |
T |
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| Q |
118 |
catccgagtaaactgatgaaatttaaa-ctcattacttaatagtttttcaaatatgaaaatatgactcagctattggatttatttgcatattgttgttaa |
216 |
Q |
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| T |
29650112 |
catccgagtaaactgatgaaatttaaaactcattacttaatagtttttcaaatatgaaaatatgactcagctattggatttatttgcatattgttgttaa |
29650211 |
T |
|
| Q |
217 |
gcacctattgtaaacattaatatactcatgaacctcaattcacgagtttcctcaaatcacagtgacagggaaatgattcaaacacatatgacaaccttat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29650212 |
gcacctattgtaaacattaatatactcatgaacctcaattcacgagtttcctcaaatcacagtgacagggaaatgattcaaacacatatgacaaccttat |
29650311 |
T |
|
| Q |
317 |
aaccaacaaaatagcaaccttt---aaatacataactaaataacagtctataaacagaactaaacttacttaccatcaacttcatggccactcattggtt |
413 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29650312 |
aaccaacaaaatagcaacctttaaaaaatacataactcaataacagtctataaacagaactaaacttacttaccatcaacttcatggccactcattggtt |
29650411 |
T |
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| Q |
414 |
tca |
416 |
Q |
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| T |
29650412 |
tca |
29650414 |
T |
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