View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3181_low_5 (Length: 423)
Name: NF3181_low_5
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3181_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 44006433 - 44006837
Alignment:
| Q |
1 |
cttttagtgtcatctgcgtatttatttgttattagtattaccgatttaggnnnnnnnnnnnngacattcatcaaagtagtattaatttatggaggaatat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |
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| T |
44006433 |
cttttagtgtcatctgcgtatttatttgttattagtattaccgatttaggttttttttttttggcattcatcaaagtagtattaatatatggaggaatat |
44006532 |
T |
|
| Q |
101 |
agtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgttggtttgcctccgaataaaacctatccaaaagtttgg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
44006533 |
agtcaaaaacttggcaactagcataaaacaatgctgctctagctag--------caacattgttggtttgtctccgaataaaacctctccaaaagtttgg |
44006624 |
T |
|
| Q |
201 |
taaagaatacaagattgtcgtacaagccaataaagtactatcccctctgttctatgactaggtcttcccgccatgccatctatgactagtttggaatcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006625 |
taaagaatacaagattgtcgtacaagccaataaagtactatcccctctgttctatgactaggtcttcccgccatgccatctatgactagtttggaatcta |
44006724 |
T |
|
| Q |
301 |
gttcaattgacgctttggagaagcttatattcataagccacattaaagcttgctttaaacccatgctaccacctctcgaggactcggtttactaacgttc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006725 |
gttcaattgacgctttggagaagcttatattcataagccacattaaagcttgctttaaacccatgctaccacctctcgaggactcggtttactaacgttc |
44006824 |
T |
|
| Q |
401 |
cacacaggttctg |
413 |
Q |
| |
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||||||||||||| |
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| T |
44006825 |
cacacaggttctg |
44006837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 65 - 337
Target Start/End: Complemental strand, 24152715 - 24152445
Alignment:
| Q |
65 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
164 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||| ||| ||| |||||| |
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| T |
24152715 |
cattcatcaaagtagtagtaatacatggaggaatataatcaaagacttggcaactagcataagacaatgc--gactagctagaaggtgaacaatattgtt |
24152618 |
T |
|
| Q |
165 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatccc-ctctgttctatgactaggt |
263 |
Q |
| |
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||||| ||||||| ||||| ||||| |||||||||||||||||| || | ||| | ||||| ||||| ||||| ||| || |||| ||||||| ||| |
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| T |
24152617 |
tgtttgtctccgaagaaaacttatccgaaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactatgttgtatgacttggt |
24152518 |
T |
|
| Q |
264 |
cttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag |
337 |
Q |
| |
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| |||||||||||| || | || ||||||||||||||||||||| || ||||| |||||| || ||||||||| |
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| T |
24152517 |
c-tcccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataag |
24152445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 65 - 362
Target Start/End: Complemental strand, 24147276 - 24146980
Alignment:
| Q |
65 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
164 |
Q |
| |
|
|||| |||||||||||| |||| ||||||| ||||| ||| | ||||||||||||||| || |||| || | ||||||||||| |||||||||||||| |
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| T |
24147276 |
cattaatcaaagtagtagtaatacatggaggtatataatcagagacttggcaactagcacaagacaacgc--cactagctagaaggtgagcaacattgtt |
24147179 |
T |
|
| Q |
165 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatccc-ctctgttctatgactaggt |
263 |
Q |
| |
|
||||| ||||||| ||||| ||||| ||||||||||||||||| || | ||| | ||||| ||||| ||||| ||| || |||| ||||||| ||| |
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| T |
24147178 |
tgtttgtctccgaagaaaacttatccgtaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactttgttgtatgacttggt |
24147079 |
T |
|
| Q |
264 |
cttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag-ccacattaaagcttgctttaaaccc |
362 |
Q |
| |
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| |||||||||||| || | || ||||||||||||||||||||| || ||||| |||||| || ||||||||| |||| || ||||||||||| |||| |
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|
| T |
24147078 |
c-tcccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataagaacacagtagagcttgctttagaccc |
24146980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 43228140 - 43227988
Alignment:
| Q |
65 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
164 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||||||| |||||||||| || ||| | || |||||| |||| |||||||| |||| ||| || |
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| T |
43228140 |
cattcatcaaggtagtaataatatatggaggaatataatcaaaaacttaagaaatagtacaagacaatgtcatactagatagaagatatgcaatattatt |
43228041 |
T |
|
| Q |
165 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattg |
217 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
43228040 |
ggtttatctccgtgtaaaatttatccgaaagtttggtatagaatacaagattg |
43227988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 35379011 - 35379060
Alignment:
| Q |
158 |
cattgttggtttgcctccgaataaaacctatccaaaagtttggtaaagaa |
207 |
Q |
| |
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||||||||| || ||| ||||||||||||| || |||||||||||||||| |
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|
| T |
35379011 |
cattgttggcttaccttcgaataaaacctaacctaaagtttggtaaagaa |
35379060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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