View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3181_low_6 (Length: 423)
Name: NF3181_low_6
Description: NF3181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3181_low_6 |
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| [»] scaffold0755 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 23124475 - 23124571
Alignment:
| Q |
269 |
catggtttacccattgattttcttgtagaagttgtagagaatcaatccactacaaaataataaatctgtgcaatatacaaagaagagacgtacattc |
365 |
Q |
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| T |
23124475 |
catggtttacccattgattttcttgtagaagttgtagagaatcaatacacttcaaaataataaatctgtgcaatatacaaagaagagacgtacattc |
23124571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 22648133 - 22648220
Alignment:
| Q |
270 |
atggtttacccattgattttcttgtagaagttgtagagaatcaatccactacaaaataataaatctgtgcaatatacaaagaagagac |
357 |
Q |
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| T |
22648133 |
atggtttacccatttattttcttgtagaagttgtagagaatcaacccacttcaaaataataaatctgtgcaatatacaaagaagagac |
22648220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 23124330 - 23124404
Alignment:
| Q |
123 |
cacatccatacaatttcatatatctatcttagaaaagaaatatagaaccaaacgcaataaaacaacatcatggttt |
198 |
Q |
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| T |
23124330 |
cacatccatacaatttcatatatctatcttagaaaagaaat-tagaaccaaacgcaataaaacaacatcatggttt |
23124404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23124207 - 23124260
Alignment:
| Q |
1 |
ttcttctattttcataaaaaattatgactgtgaccctaattatcaacgttatag |
54 |
Q |
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| T |
23124207 |
ttcttctattttcataaaaatttatgactgtgaccctaattatcaacgttatag |
23124260 |
T |
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Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 269 - 365
Target Start/End: Complemental strand, 22629171 - 22629075
Alignment:
| Q |
269 |
catggtttacccattgattttcttgtagaagttgtagagaatcaatccactacaaaataataaatctgtgcaatatacaaagaagagacgtacattc |
365 |
Q |
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| T |
22629171 |
catggtttacccatttattttcttgtagaagttgtagagaatcaatccacttcaaaataataaatttgtgcaatatacaaagaagagacatacattc |
22629075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 27029924 - 27029837
Alignment:
| Q |
270 |
atggtttacccattgattttcttgtagaagttgtagagaatcaatccactacaaaataataaatctgtgcaatatacaaagaagagac |
357 |
Q |
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| T |
27029924 |
atggtttacccatttattttcttgtagaagttgtagagaatcaacccacttcaaaataataaatctgtgcaatatacaaagaagagac |
27029837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22629335 - 22629282
Alignment:
| Q |
1 |
ttcttctattttcataaaaaattatgactgtgaccctaattatcaacgttatag |
54 |
Q |
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| T |
22629335 |
ttcttctattttcataaaaatttatgacattgaccctaattatcaactttatag |
22629282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0755 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0755
Description:
Target: scaffold0755; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 5307 - 5220
Alignment:
| Q |
270 |
atggtttacccattgattttcttgtagaagttgtagagaatcaatccactacaaaataataaatctgtgcaatatacaaagaagagac |
357 |
Q |
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| T |
5307 |
atggtttacccatttattttcttgtagaagttgtagagaatcaacccacttcaaaataataaatctgtgcaatatacaaagaagagac |
5220 |
T |
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