View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3182_high_5 (Length: 251)
Name: NF3182_high_5
Description: NF3182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3182_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 2764407 - 2764593
Alignment:
| Q |
1 |
aacaccaattgaaacagtgtcgtaagatacaggatgaaaatattcgttagggtttgacacaatgagggtaatatcccattcggcagtgagtttagaaccg |
100 |
Q |
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| T |
2764407 |
aacaccaattgaagcagtgtcgtaagatacaggatgaaaattttcgttagggtttgacacaatgagagtaatatcccattcggcagtgagtttagaaccg |
2764506 |
T |
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| Q |
101 |
tttatattaagtgagttgatcgtagccaagtcgactctgaaccttggtgttctagggcccaggcttgcgatgaaagttatcaagaca |
187 |
Q |
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| T |
2764507 |
tttatattaagtgagttgatcgtagccaagtcgactcgaaaccttggtgttctagggcccaggcttgcgatgaaagttatcaagaca |
2764593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 2760042 - 2760207
Alignment:
| Q |
1 |
aacaccaattgaaacagtgtcgtaagatacaggatgaaaatattcgttagggtttgacacaatgagggtaatatcccattcggcagtgagtttagaaccg |
100 |
Q |
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| T |
2760042 |
aacaccaatagaaacagtgttgtaagatacacgatgatagtcgtagttggggtttgacacgaagagggtaatatcccattcggcagtgagtttagaacag |
2760141 |
T |
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| Q |
101 |
tttatattaagtgagttgatcgtagccaagtcgactctgaaccttggtgttctagggcccaggctt |
166 |
Q |
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| T |
2760142 |
tttatattaagtgacttgatggaagctaagtcgactccaaacattggagtactagggcccaagctt |
2760207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 2769293 - 2769378
Alignment:
| Q |
1 |
aacaccaattgaaacagtgtcgtaagatacaggatgaaaatattcgttagggtttgacacaatgagggtaatatcccattcggcag |
86 |
Q |
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| T |
2769293 |
aacaccaatagaaacagtgtcgtaagatacaggatgatagtcgtagttggggtttgacacgtagagggtaacatcccattcggcag |
2769378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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