View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3182_low_1 (Length: 527)
Name: NF3182_low_1
Description: NF3182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3182_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 253 - 517
Target Start/End: Original strand, 1753120 - 1753384
Alignment:
| Q |
253 |
gggaggaaccagagtgcaaaggctttctggaatgcaaaagcaagtgcttagcttatacagaggatttcttcgtgcagcacgttccaaaccagacgaagaa |
352 |
Q |
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| T |
1753120 |
gggaggaaccagagtgcaaaggctatctggaatgcaaaagcaagtgcttagcttatacagaggatttcttcgtgctgcacgttccaaaccggaccaagaa |
1753219 |
T |
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| Q |
353 |
cgccgcaacatagaatccatagtatctcaagaatttcgtcacaattcaaaacaagttgataggaagaattttcaatacattgaatatttacttcgccgtg |
452 |
Q |
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| T |
1753220 |
cgccgcaacatagaatccatagtatctcaagaatttcgtcacaattcaaaagaagttgataggaagaattttcaatacattgaatatttacttcgccgtg |
1753319 |
T |
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| Q |
453 |
gtcataaacagcttcatcagcttaacaaccctggtaccaccgggttatcttcattgcaacttcat |
517 |
Q |
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| T |
1753320 |
gtcataaacagcttgatcagcttaacaaccctggtaccaccgggttatcttcattgcaacttcat |
1753384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 1752861 - 1753010
Alignment:
| Q |
19 |
aagagcccaaacccaataagcccaaataatgttcagcccatttcagatctcgtgttccaaaacggaacaacaaaaccaagataa-agaaaccacctaacg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| |||||||| |
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| T |
1752861 |
aagagcccaaacccaataagcccaaataatgttcagcccatttcagatctcgtgttccaaaacggaacaacaacacaaaatcaagagaaagcacctaaca |
1752960 |
T |
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| Q |
118 |
taacgaatctaaatctcaacttcgttcgatcctacgctcttcttgttctcattc |
171 |
Q |
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| T |
1752961 |
taacgaatctaaatctcaac----ttcgatcctacgctcttcttgttctcattc |
1753010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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