View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3182_low_2 (Length: 488)
Name: NF3182_low_2
Description: NF3182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3182_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 225 - 480
Target Start/End: Original strand, 35967488 - 35967779
Alignment:
| Q |
225 |
agtcacgtgataaattgcaattagagtttattataataaaaactttattttagagaaaagtagcacatgagtctggttgtggttgcatcttctcttctgt |
324 |
Q |
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| T |
35967488 |
agtcacgtgacaaattgcaattagagtttattataataaaaactttatgtttgagaaaagtagcacatcagtctggttgtggttgcatcttctcttctgt |
35967587 |
T |
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| Q |
325 |
cacaatatttttcaaacacaacaaaattccttttctctcttacatacatatactggaaaaa--------------------tatccctctattaatggtt |
404 |
Q |
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| T |
35967588 |
cacaatatttttcaaacacaacaaaattccttctctctcttacatacatatactggaaaaatagtgacgggaggggatttctatccctctattaatggtt |
35967687 |
T |
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| Q |
405 |
gaaaatgaccactaatttaagt----------------agataccttataattttaattttcatttcacatctctattcctccattcatctc |
480 |
Q |
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| T |
35967688 |
gaaaatgaccactaatttaagtagttgccacacatttaagataccttataattttaattttcatttcacatctctattcctccattcatctc |
35967779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 34 - 214
Target Start/End: Original strand, 35967098 - 35967280
Alignment:
| Q |
34 |
aaatgataaaaattgtaaaatctatgcacaaaaaagaaacgttaacctataaagattaaagaatctatataaacaaaacaggta--ttataacacaagaa |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
35967098 |
aaatgataaaaattgtaaaatctatgcacaaaaaagaaacgttaacctataaagattaaagaatctatataaacaggtattataagttataacacaagaa |
35967197 |
T |
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| Q |
132 |
aaagaatacaaagctgaaagcgaaaggctgtagttatggaatgtgtgtttattgattgatcattcaacattttccacgtgcat |
214 |
Q |
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| T |
35967198 |
aaagaatacaaagctgaaagcgaaaggctgtagttttggaatgtgtgtttattgattgatcattcaacattttccacgtgcat |
35967280 |
T |
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