View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3182_low_3 (Length: 383)
Name: NF3182_low_3
Description: NF3182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3182_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 2764419 - 2764031
Alignment:
| Q |
1 |
ttcaattggtgttaattacagcaacaagaataaccaaagccttcttgctaccacactcttaaatcctttctctcaaggaaactatcacaaagtccataga |
100 |
Q |
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| T |
2764419 |
ttcaattggtgttaattacaacaacaagaataaccaaagccttcttgctaccacacttttaaatcctttctctcaaggaaactatcacaaagtcgataaa |
2764320 |
T |
|
| Q |
101 |
agagtccaattcaacatggatgtgaataatgatgtggtaacaaacattgccaatagttgctcttgtggagctgttaattttgggattgtgttgtcaactc |
200 |
Q |
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| T |
2764319 |
agagtccaattcaacatggatgtgaataatgatgtagcaaagaacattgctgatagttgctctcgtggagctgttaattttgggattgtgttgtcaactc |
2764220 |
T |
|
| Q |
201 |
cttttaagtacaagggcatatacgaccttttccgaagggttcgtcatttgaaggttgtttgtgagcctcttagctttataacctctcaaggtcatt---- |
296 |
Q |
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| T |
2764219 |
cttttaagtacaagggcatatacgaccatttccgaaggattcgtcatttgaaggttgtttgtgagcctcttagctttataacctctaaaggtcatttaaa |
2764120 |
T |
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| Q |
297 |
---------taattgggctttactacgtggtgtaagatgccactagttaa-cctactagaaaatagaggc--atgcatgtttacctttg |
373 |
Q |
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| T |
2764119 |
tggaacatctaattgggctttactacgcggtgtaagatgccactagttaaccctactaggaaatagaagcatatgcatgtttacctttg |
2764031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 2760050 - 2759756
Alignment:
| Q |
5 |
attggtgttaattacagcaacaagaataaccaaagccttcttgctaccacactcttaaatcctttctctcaaggaaactatcacaaagtccatagaagag |
104 |
Q |
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| T |
2760050 |
attggtgttcattacagcaacaagaataaccaaagccttcttgctaccacactcttaaaccctttctctcaaataaacaatcacaaagacaataaaagag |
2759951 |
T |
|
| Q |
105 |
tccaattcaacatggatgtgaataatgatgtggtaacaaacattgccaatagttgctcttgtggagctgttaattttgggattgtgttgtcaactccttt |
204 |
Q |
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| T |
2759950 |
tccaattcaacatggatgtgaataatgatatagcaatgaacattgccgatagttgctctcgcggagctgttgattttgggattgtgttgtcaacttcttt |
2759851 |
T |
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| Q |
205 |
taagtacaagggcatatacgaccttttccgaagggttcgtcatttgaaggttgtttgtgagcctcttagctttataacctctcaaggtcatttaa |
299 |
Q |
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| T |
2759850 |
caagtataagggcaggtacgaccattttcgaagggttcgtcatttgaaggttgtttgtgagcctcttagctttataacctctaaaggtcatttaa |
2759756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 2769301 - 2769010
Alignment:
| Q |
5 |
attggtgttaattacagcaacaagaataaccaaagccttcttgctaccacactcttaaatcctttctctcaaggaaactatcacaaagtccatagaagag |
104 |
Q |
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|||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || | | ||| ||||| |
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| T |
2769301 |
attggtgttagttacatcaacaagaataaccatagccttcttgctaccacactcttaaaccctttctctcaaggaaac-atgg--atgcgaataaaagag |
2769205 |
T |
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| Q |
105 |
tccaattcaacatggatgtgaataatgatgtggtaacaaacattgccaatagttgctcttgtggagctgttaattttgggattgtgttgtcaactccttt |
204 |
Q |
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| T |
2769204 |
tccaattcaacatggatgtgaataatgatgtggtagcaaacattgccgatagttgctctcgcggagctgttaactttgggattgtggtgtcaacttcttt |
2769105 |
T |
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| Q |
205 |
taagtacaagggcatatacgaccttttccgaagggttcgtcatttgaaggttgtttgtgagcctcttagctttataacctctcaaggtcatttaa |
299 |
Q |
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| T |
2769104 |
caagtacaagggcaggtacgaccatttccgaagggttcgtcatttgaaggttgtttgtgagcctcttagctttataacctctgaaggtcatttaa |
2769010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 2769623 - 2769553
Alignment:
| Q |
229 |
tttccgaagggttcgtcatttgaaggttgtttgtgagcctcttagctttataacctctcaaggtcatttaa |
299 |
Q |
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| T |
2769623 |
tttccgaagggttcgtcctttcaaggttgtttgtgagcctcttagctttataacctctgaaggtcatttaa |
2769553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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