View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3182_low_5 (Length: 262)
Name: NF3182_low_5
Description: NF3182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3182_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 41170227 - 41169989
Alignment:
| Q |
16 |
catttataatgtatcagactctaaataggataaaattttcatcatcaccacaggcacattctttatgctgcccatttcagaccctgttgaacttttggtg |
115 |
Q |
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| T |
41170227 |
catttataatgtatcagactctaaataggataaaattttcatcatcaccacaggcacattctttatgctgcccatttcagaccctgttgaacttttggtg |
41170128 |
T |
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| Q |
116 |
ctctatttaaaaagcacttgtaggatatggtaaatcatgaaataaagttacatgtgattgtgaaagtgtgggaggaatatatatgaactcaaaatattct |
215 |
Q |
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| T |
41170127 |
ctctatttaaaaagcacttgtaggatatggtaaatcatgaaataaagttacatgtgattgtgaaagcgtgggaggaatatatatgaactcaaaatattct |
41170028 |
T |
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| Q |
216 |
aaaaaattta-ttgtctttttctttgtaaagagtataattt |
255 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
41170027 |
--aaaatttatttgtctttttctttgtaaagagtataattt |
41169989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 41168359 - 41168270
Alignment:
| Q |
56 |
atcatcaccacaggcacattctttatgctgcccatttcagaccc-tgttgaa-cttttggtgctctatttaaaaagcacttgtaggatatg |
144 |
Q |
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||||||||||||||||| |||||||||||| |||||| |||||| | ||||| |||| |||||||| || |||||||||| ||||||||| |
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| T |
41168359 |
atcatcaccacaggcacgttctttatgctggccattttagaccctttttgaatattttagtgctcta-ttcaaaagcacttctaggatatg |
41168270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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