View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3182_low_7 (Length: 228)

Name: NF3182_low_7
Description: NF3182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3182_low_7
NF3182_low_7
[»] chr6 (8 HSPs)
chr6 (88-178)||(902472-902562)
chr6 (127-176)||(901659-901708)
chr6 (122-174)||(12261244-12261296)
chr6 (122-174)||(27129095-27129147)
chr6 (127-174)||(20746382-20746429)
chr6 (122-174)||(16146331-16146383)
chr6 (7-62)||(10999016-10999071)
chr6 (138-174)||(20746437-20746473)
[»] chr4 (11 HSPs)
chr4 (91-184)||(13630333-13630425)
chr4 (92-176)||(44183542-44183625)
chr4 (88-176)||(45044624-45044711)
chr4 (90-176)||(50282652-50282737)
chr4 (90-176)||(9091674-9091758)
chr4 (127-174)||(9087095-9087142)
chr4 (145-176)||(45045065-45045096)
chr4 (127-176)||(26280323-26280372)
chr4 (139-176)||(26281017-26281054)
chr4 (131-176)||(44182798-44182845)
chr4 (127-176)||(50281915-50281966)
[»] chr7 (9 HSPs)
chr7 (88-184)||(30474884-30474979)
chr7 (88-176)||(14682710-14682798)
chr7 (90-174)||(17238358-17238441)
chr7 (127-176)||(8684969-8685018)
chr7 (122-176)||(18298067-18298121)
chr7 (122-174)||(17278652-17278704)
chr7 (122-174)||(30765920-30765972)
chr7 (127-176)||(17236299-17236350)
chr7 (127-176)||(25443251-25443301)
[»] chr5 (6 HSPs)
chr5 (88-176)||(38385122-38385209)
chr5 (122-174)||(6794535-6794587)
chr5 (122-173)||(23082793-23082844)
chr5 (145-176)||(38385577-38385608)
chr5 (127-176)||(13824397-13824447)
chr5 (127-176)||(24041991-24042041)
[»] chr3 (8 HSPs)
chr3 (88-176)||(54834184-54834272)
chr3 (90-176)||(52255247-52255332)
chr3 (122-174)||(34817582-34817634)
chr3 (137-176)||(33389422-33389461)
chr3 (122-174)||(32305024-32305076)
chr3 (122-174)||(42540954-42541006)
chr3 (19-62)||(33390211-33390254)
chr3 (128-176)||(52254514-52254564)
[»] chr1 (13 HSPs)
chr1 (91-185)||(52751290-52751384)
chr1 (94-176)||(24509185-24509266)
chr1 (88-176)||(50124321-50124405)
chr1 (112-176)||(29021826-29021890)
chr1 (127-176)||(52750403-52750452)
chr1 (127-176)||(31697367-31697416)
chr1 (19-62)||(52751204-52751247)
chr1 (127-184)||(968156-968213)
chr1 (122-174)||(47112345-47112397)
chr1 (127-176)||(968215-968264)
chr1 (122-173)||(968917-968968)
chr1 (127-174)||(36142366-36142413)
chr1 (117-176)||(24508445-24508506)
[»] chr2 (8 HSPs)
chr2 (127-176)||(10708383-10708432)
chr2 (127-176)||(3093390-3093438)
chr2 (122-174)||(8029762-8029814)
chr2 (122-174)||(20685883-20685935)
chr2 (122-174)||(40468848-40468900)
chr2 (127-176)||(12602345-12602395)
chr2 (122-173)||(28189700-28189751)
chr2 (122-174)||(19298323-19298375)
[»] scaffold0202 (1 HSPs)
scaffold0202 (122-174)||(21961-22013)
[»] chr8 (1 HSPs)
chr8 (122-174)||(13462358-13462410)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 902472 - 902562
Alignment:
Q  88 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataa 178  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  902472 ttgttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataa 902562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 901708 - 901659
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  901708 aaattggttattgattgagttatgaaatagattatgtttatagatttgat 901659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 12261244 - 12261296
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  12261244 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 12261296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 27129147 - 27129095
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  27129147 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 27129095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 20746382 - 20746429
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  20746382 aaattggttattgattaagttatgaaattgattatgtttatatatttg 20746429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 16146383 - 16146331
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| |||||||||||||||| |||||||| |||||    
T  16146383 tgaaaaaattggttattgattaagttatgaaattgattttgtttatatatttg 16146331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 10999071 - 10999016
Alignment:
Q  7 agtgagttggacgagttggttgatatcgttagagaagcacagcggttgttgttatg 62  Q
    ||||| ||||||||||||||||||||  ||||||||| | || |||||||||||||    
T  10999071 agtgatttggacgagttggttgatatatttagagaagtatagtggttgttgttatg 10999016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 20746437 - 20746473
Alignment:
Q  138 tgattgagttatgaaattgattatgtttatagatttg 174  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  20746437 tgattaagttatgaaattgattatgtttatatatttg 20746473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 13630425 - 13630333
Alignment:
Q  91 ttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataatgatga 184  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13630425 ttgtttggtaaattaaagtgatttt-tttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagatga 13630333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 44183542 - 44183625
Alignment:
Q  92 tgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44183542 tgtttggtaaattaaagtgatttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 44183625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 45044711 - 45044624
Alignment:
Q  88 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  45044711 ttgttgtttggtaaattaaagtgatttt-tttagtgaacaaattggttattgattgagttatgaaattgattatgtttatatatttgat 45044624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 50282652 - 50282737
Alignment:
Q  90 gttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    |||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50282652 gttgtttggtaaattaaagtgacttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 50282737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 9091758 - 9091674
Alignment:
Q  90 gttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    |||||||||||||||||||| |||||  ||  ||||||||||| ||||| |||||||||||||||||| || |||||||||||||||    
T  9091758 gttgtttggtaaattaaagtgatttt--ttcatgaacaaattgcttgttaattgagttatgaaattgaatacgtttatagatttgat 9091674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 9087095 - 9087142
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  9087095 aaattggttattgattaagttatgaaattgattatgtttatatatttg 9087142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 45045065 - 45045096
Alignment:
Q  145 gttatgaaattgattatgtttatagatttgat 176  Q
    ||||||||||||||||||||||||||||||||    
T  45045065 gttatgaaattgattatgtttatagatttgat 45045096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 26280372 - 26280323
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    ||||||||| |||||| || ||||||||| |||||||||||| |||||||    
T  26280372 aaattggttattgattaagatatgaaattcattatgtttataaatttgat 26280323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 26281017 - 26281054
Alignment:
Q  139 gattgagttatgaaattgattatgtttatagatttgat 176  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  26281017 gattgagatatgaaattgtttatgtttatagatttgat 26281054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 44182845 - 44182798
Alignment:
Q  131 tggttgttgattgagttatgaaattgat--tatgtttatagatttgat 176  Q
    ||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  44182845 tggttattgattgagttatgaaatggattatatgtttatagatttgat 44182798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 50281966 - 50281915
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 176  Q
    |||||| || |||||||||||||||||| |||  ||||||||||||||||||    
T  50281966 aaattgattattgattgagttatgaaatggattatatgtttatagatttgat 50281915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 30474884 - 30474979
Alignment:
Q  88 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataatgatga 184  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30474884 ttgttgtttggtaaattaaagtgttttt-tttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagatga 30474979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 14682710 - 14682798
Alignment:
Q  88 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    |||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14682710 ttgttggttggtaaattaaagtgattttttttagtgaataaattggttgttgattgagttatgaaattgattatgtttatagatttgat 14682798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 17238358 - 17238441
Alignment:
Q  90 gttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17238358 gttgtttggtaaattaaagtgatttttttta-tgaacaaattgattgttgattgagttatgaaattgattatgtttatagatttg 17238441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 8685018 - 8684969
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  8685018 aaattggttgttgattgagttataaaattgattatgtttataggtttgat 8684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 18298067 - 18298121
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    |||| ||||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  18298067 tgaaaaaattggttattgattgagatatgaaattgtttatgtttatagatttgat 18298121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 17278704 - 17278652
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  17278704 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 17278652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 30765972 - 30765920
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  30765972 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 30765920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 17236350 - 17236299
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 176  Q
    ||||||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  17236350 aaattggttattgattgagttatgaaatggattatatgtttatagatttgat 17236299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 25443301 - 25443251
Alignment:
Q  127 aaattggttgttgattgagttatgaaattga-ttatgtttatagatttgat 176  Q
    ||||||||| | ||||||||||||||||| | |||||||||||||||||||    
T  25443301 aaattggttatagattgagttatgaaattaatttatgtttatagatttgat 25443251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 38385209 - 38385122
Alignment:
Q  88 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38385209 ttgttgtttggtaaattaaagtgatttt-tttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 38385122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 6794535 - 6794587
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  6794535 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 6794587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 23082844 - 23082793
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagattt 173  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  23082844 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatattt 23082793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 38385577 - 38385608
Alignment:
Q  145 gttatgaaattgattatgtttatagatttgat 176  Q
    ||||||||||||||||||||||||||||||||    
T  38385577 gttatgaaattgattatgtttatagatttgat 38385608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 13824397 - 13824447
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgat 176  Q
    ||||||||| ||||| ||| ||||||||||||| |||||||||||||||||    
T  13824397 aaattggttattgatggagatatgaaattgattaatgtttatagatttgat 13824447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 24042041 - 24041991
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgat 176  Q
    ||||||||| ||||| ||| ||||||||||||| |||||||||||||||||    
T  24042041 aaattggttattgatggagatatgaaattgattaatgtttatagatttgat 24041991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 54834272 - 54834184
Alignment:
Q  88 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54834272 ttgttgtttggtaaattaaagtgattttttttagtgaataaattggttgttgattgagttatgaaattgattatgtttatagatttgat 54834184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 52255247 - 52255332
Alignment:
Q  90 gttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52255247 gttgtttggtaaattaaagtgatttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatatgat 52255332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 34817634 - 34817582
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  34817634 tgaaaaaattggttattgattaagttatgaaattgattatgtttatagatttg 34817582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 176
Target Start/End: Complemental strand, 33389461 - 33389422
Alignment:
Q  137 ttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33389461 ttgattgagttatgaaattgattatgtttatagatttgat 33389422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 32305024 - 32305076
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  32305024 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 32305076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 42540954 - 42541006
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  42540954 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 42541006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 33390211 - 33390254
Alignment:
Q  19 gagttggttgatatcgttagagaagcacagcggttgttgttatg 62  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  33390211 gagttggttgatatctttagagaagcacaacggttgttgttatg 33390254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 52254564 - 52254514
Alignment:
Q  128 aattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 176  Q
    |||||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  52254564 aattggttattgattgagttatgaaatggattatatgtttatagatttgat 52254514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 52751290 - 52751384
Alignment:
Q  91 ttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataatgatgaa 185  Q
    |||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  52751290 ttgtttggtaaattaaagtgcttttttttagtgaacaaattggttgttgattgagttatgaaattgattttgtttatagatttgatgataatgaa 52751384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 24509185 - 24509266
Alignment:
Q  94 tttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24509185 tttggtaaattaaagtgatttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 24509266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 50124321 - 50124405
Alignment:
Q  88 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  50124321 ttgttgtttggtaaattaaagtgattttttttagtgaacaaattg----ttgattgagttatgaaattgattatgtttatagatttgat 50124405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 29021890 - 29021826
Alignment:
Q  112 ttttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29021890 ttttttttagtgaacaaattggttgttgattgagttatgaaattgattttgtttatagatttgat 29021826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 52750452 - 52750403
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52750452 aaattggttattgattgagttatgaaattgattatgtttatagatttgat 52750403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 31697416 - 31697367
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  31697416 aaattggttattgattgagatatgaaattgattatgtttatagatttgat 31697367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 52751204 - 52751247
Alignment:
Q  19 gagttggttgatatcgttagagaagcacagcggttgttgttatg 62  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  52751204 gagttggttgatatctttagagaagcacagcggttgttgttatg 52751247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 968213 - 968156
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataatgatga 184  Q
    ||||||||| |||||| || |||||||||||||||||||||| ||||||| |||||||    
T  968213 aaattggttattgattaagatatgaaattgattatgtttataaatttgatgatgatga 968156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 47112397 - 47112345
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  47112397 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 47112345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 968264 - 968215
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    ||||||||| |||||| || |||||||||||||||||||||| |||||||    
T  968264 aaattggttattgattaagatatgaaattgattatgtttataaatttgat 968215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 968917 - 968968
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagattt 173  Q
    |||| ||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  968917 tgaaaaaattggtgattgattgagatatgaaattgtttatgtttatagattt 968968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 36142413 - 36142366
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||||| || |||||| ||||||||||||||||||||||||| |||||    
T  36142413 aaattgattattgattaagttatgaaattgattatgtttatatatttg 36142366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 24508506 - 24508445
Alignment:
Q  117 tttagtgaacaaattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 176  Q
    |||| |||| ||||||||| ||| |||||||||||||| |||  ||||||||||||||||||    
T  24508506 tttaatgaaaaaattggttattggttgagttatgaaatagattatatgtttatagatttgat 24508445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 10708432 - 10708383
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10708432 aaattggttattgattgagttatgaaattgattatgtttatagatttgat 10708383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 3093438 - 3093390
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 176  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  3093438 aaattggttattgattgagttatgaaatt-attatgtttatagatttgat 3093390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 8029762 - 8029814
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  8029762 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 8029814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 20685935 - 20685883
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  20685935 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 20685883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 40468848 - 40468900
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  40468848 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 40468900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 12602345 - 12602395
Alignment:
Q  127 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgat 176  Q
    ||||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  12602345 aaattggttattgattgagatatgaaattgattaatgtttatagatttgat 12602395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 28189751 - 28189700
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagattt 173  Q
    |||| |||||| || |||||| ||||||||||||||||||||||||| ||||    
T  28189751 tgaaaaaattgattattgattaagttatgaaattgattatgtttatatattt 28189700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 19298323 - 19298375
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| | |||||||||||||| |||||||| |||||    
T  19298323 tgaaaaaattggttattgattaaattatgaaattgattttgtttatatatttg 19298375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 21961 - 22013
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  21961 tgaaaaaattggttattgattaagttatgaaattgattatgtttatagatttg 22013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 13462410 - 13462358
Alignment:
Q  122 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 174  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  13462410 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 13462358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University