View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3183_high_1 (Length: 599)
Name: NF3183_high_1
Description: NF3183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3183_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 582
Target Start/End: Complemental strand, 52026354 - 52025794
Alignment:
| Q |
17 |
atgaaattgaacgggaggaagttttctcacctnnnnnnntgagcgattggtgcaaatatgagaggtatccatgactttgaccctcgcaaatttcccaagg |
116 |
Q |
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|||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52026354 |
atgaaattgaacgggaggaagttttctcgccaaaaaaaaagagcgatttgtgcaaatatgagaggtatccatgactttgaccctcgcaaatttcccaagg |
52026255 |
T |
|
| Q |
117 |
gtccatgctcttgacaaatgacatannnnnnncttgttgtgaaatatagagactagtctgtttgaattgagaataacaaaaaatagaatctcgtcttgaa |
216 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52026254 |
gtccatgctcttgacaaatgacatatttttttcttgttgtgaaata--gagactagtctgtttgaattgagaataacaaaaaatagaatctcgtcttgaa |
52026157 |
T |
|
| Q |
217 |
tagtatagtatactagtatgcatgaagtaaaaaacacactagtgtctcgcatggttagtttacacgaattagatagatttcaactttatataaaaattgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52026156 |
tagtatagtatactagtatgcatgaagtaaaaaacacactagtgtctcgcatggttagtttacacgaattagatagatttcaactttatataaaaattgc |
52026057 |
T |
|
| Q |
317 |
tacgccttttgtcaaaaataaatcaaagactgacgctcttctaagttttctattttatctcttatgctcaacatacttttgagccactagtttgttatat |
416 |
Q |
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||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52026056 |
tacgccttttgtcaaaaataaatcaaagattgac---cttccaagttttctattttatctctaatgctcaacatacttttgagccactagtttgttatat |
52025960 |
T |
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| Q |
417 |
aaaaagtgcgaaagatatgtatttaaatgagctcctggaacccaaagtaatgacatctcctcaacacggccttgtatctctctcatgcttcacaaaatgg |
516 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52025959 |
aaaaagtgtgaaagatatgtatttaaatgagctcctcgaacccaaagtaatgacatcttctcaacacggccttgtatctctctcatgcttcacaaaatgg |
52025860 |
T |
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| Q |
517 |
tctagttgaaccataatagaacacaacaacatttcgcttagcctccatgaacttgttacatggaaa |
582 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
52025859 |
tctagttgaaccataatagaacacaacaacaattctcttagcctccatgaacttgttacatggaaa |
52025794 |
T |
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