View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3183_high_3 (Length: 435)
Name: NF3183_high_3
Description: NF3183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3183_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 35560872 - 35560466
Alignment:
| Q |
11 |
cataggtgccacattgcagacacgtgacctggctaattatcaagtaagaaaattattctctgannnnnnnnnnnnaaagaaaaattattctatgatggtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| || |
|
|
| T |
35560872 |
cataggtgccacattgcagacacgtgacctggctaattctcaagtaagaaaattattctatgattttttttt---aaagaaaaattattctatgatgatg |
35560776 |
T |
|
| Q |
111 |
atgatga-tgtttttattttgacaaaattttataatgatgacgatgatccttgcattattaaatttcaaaggccaacctgaaaagaaaaaacaattattc |
209 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35560775 |
atgatgactgtttttattttgacaaaattttataatgatgacgatgatccttgcattattaaatttcaaaggccaacctgaaaagaaaaaacaattattc |
35560676 |
T |
|
| Q |
210 |
ttcaataaaagtctctgatagtaaaatgaagatagggctaagatgttttaaaagtaagatgaattaagttttcagcggttcaaactttggaaccatgaac |
309 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35560675 |
ttcaatagaagtctctgatagtaaaatgaagatagggctaagatgttttaaaagtaagatgaattaagttttcagcggttcaaactttggaaccatgaac |
35560576 |
T |
|
| Q |
310 |
agttgaacacctaaatttcaagttttaaagcttagttcagatcagaatgctccactgatttggcataactgcatgaaagtttagttaagaaattaaatga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35560575 |
agttgaacacctaaatttcaagttttaaagcttagttcagatcagaatgctccactgatttggcataactgcatgaaagtttagttaagaaattaaatga |
35560476 |
T |
|
| Q |
410 |
gaaaactaat |
419 |
Q |
| |
|
|||||||||| |
|
|
| T |
35560475 |
gaaaactaat |
35560466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University