View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3183_low_1 (Length: 892)
Name: NF3183_low_1
Description: NF3183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3183_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 812; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 1 - 873
Target Start/End: Complemental strand, 1251531 - 1250658
Alignment:
| Q |
1 |
aagagcagcataagtatcttcttgatcccagccgtcaagccatgatgtcatagaacgagacctgcatgaagctcctttcccgctgttgattcgagaaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251531 |
aagagcagcataagtatcttcttgttcccagccgtcaagccatgatgtcatagaacgagacctgcatgaagctcctttcccgctgttgattcgagaaacc |
1251432 |
T |
|
| Q |
101 |
gccgccttgctgctcttattattatcagctgaaagctttgcttcagtctcgatgacatcggagctcattctctcatccactgacacctgactctgacaaa |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1251431 |
gacgccttgctgctcttattattatcagctgaaagctttgcttcagtctcgatgacatcggagctcattctctcatccactgacacctgactctgacaaa |
1251332 |
T |
|
| Q |
201 |
atggaagagtttccgttttcttggcagcagctgactccatttggttggcagcagctcgtgaaattgtctagagatccattcagtacagggttttcttcta |
300 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251331 |
a-ggaatagtttccgttttcttggcagcagctgactccatttggttggcagcagctcgtgaaattgtctagagatccattcagtacagggttttcttcta |
1251233 |
T |
|
| Q |
301 |
aatctcctatgcaactcagcagaagcctttgttcttgcttttgtatttgttcatcttctgataatcccatctgacccctgatggaaataatcaaagaagt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1251232 |
aatctcctatgcaactcagcagaagcctttgttcttgcttttgtatttgttcatcttctgataatcccatctgacccctgatggaaataatcaaataagt |
1251133 |
T |
|
| Q |
401 |
aaacaatgaatacaagtgagaatatgctccagggacatttgtcgacagtatcttaactcatcagccagattcatattaagcaatatattggttatcagta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1251132 |
aaacaatgaatacaagtgagaatatgctccagggacatttgtcgacagtatcttaactcatcagccagattcatattaagcaatatattggttatcagta |
1251033 |
T |
|
| Q |
501 |
tctcacattcctgcgagttgtatctcgattcgatataaaactgactcaatcgatatgaaattctagtgtctatctaatatgaatatgcttttcatcttaa |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1251032 |
tctcacattcctgcgagttgtatctcgattcgatataaaactgactcaatcgatacgaaattctagtgtatatctaatatgaatatgcttttcatcttaa |
1250933 |
T |
|
| Q |
601 |
atctgattcgtcatgatggaatctcaattccaattcattatgatgtatatcaattcactattatgaaccctgataca--ctaataaaatcactacctaaa |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1250932 |
atctgattcgtcatgatggaatctcaattccaattcattatgatgtatctcaattcactattatgaaccctgatacactctaataaaatcactacctaaa |
1250833 |
T |
|
| Q |
699 |
cttagtgtagccaaccactctttatgacaactttgcatagtcagccacttttcaattgacatttgatttacaacttgaatcctgaattatttttaggcta |
798 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1250832 |
cttagtgtagccaaccactttttttgacaactttgcatagtcagccacttttcaattgacatttgatttacaacttgaatcctgaattatttttaggcta |
1250733 |
T |
|
| Q |
799 |
gtagatgatatatcagcttatgattgtgctatgttacttgtttttacttaaaagtgtaatattgttattcaaatt |
873 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
1250732 |
gtagatgatatatcagcttatgattgtgctatgttacttgtttttacttaaaagtgtaatatttttattcgaatt |
1250658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 787
Target Start/End: Original strand, 52750150 - 52750254
Alignment:
| Q |
685 |
aatcactacctaaacttagtgtagccaaccactcttta--tgacaactttgcatagtcagccacttttcaattgacatttgatttacaacttgaatcctg |
782 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||| || ||| |||| ||| || ||||||||| ||| |||||||| | |||||||||| || |
|
|
| T |
52750150 |
aatcactacataaacttagtgtagccaaccactttttacttgtcaattttgtataaccaaccacttttcttttgtcatttgatatttaacttgaatcttg |
52750249 |
T |
|
| Q |
783 |
aatta |
787 |
Q |
| |
|
||||| |
|
|
| T |
52750250 |
aatta |
52750254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 804; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 804; E-Value: 0
Query Start/End: Original strand, 1 - 873
Target Start/End: Complemental strand, 42018311 - 42017438
Alignment:
| Q |
1 |
aagagcagcataagtatcttcttgatcccagccgtcaagccatgatgtcatagaacgagacctgcatgaagctcctttcccgctgttgattcgagaaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42018311 |
aagagcagcataagtatcttcttgttcccagccgtcaagccatgatgtcatagaacgagacctgcatgaagctcctttcccgctgttgattcgagaaacc |
42018212 |
T |
|
| Q |
101 |
gccgccttgctgctcttattattatcagctgaaagctttgcttcagtctcgatgacatcggagctcattctctcatccactgacacctgactctgacaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42018211 |
gccgccttgctgctcttattattatcagctgaaagctttgcttcagtctcgatgacatcggagctcattctctcatccactgacacctgactctgacaaa |
42018112 |
T |
|
| Q |
201 |
atggaagagtttccgttttcttggcagcagctgactccatttggttggcagcagctcgtgaaattgtctagagatccattcagtacagggttttcttcta |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42018111 |
a-ggaagagtttccgttttcttggcagcagctcactccatttggttggcagcagctcgtgaaattgtctagagatccattcagtacagggttttcttcta |
42018013 |
T |
|
| Q |
301 |
aatctcctatgcaactcagcagaagcctttgttcttgcttttgtatttgttcatcttctgataatcccatctgacccctgatggaaataatcaaagaagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42018012 |
aatctcctatgcaactcagcagaagcctttgttcttgcttttgtatttgttcatcttctgataatcccatctgacccctgatggaaataatcaaagaagt |
42017913 |
T |
|
| Q |
401 |
aaacaatgaatacaagtgagaatatgctccagggacatttgtcgacagtatcttaactcatcagccagattcatattaagcaatatattggttatcagta |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42017912 |
aaacaatgaatacaagtgagaatatgctccagggacatttgtcgacagtatcttaactcatcagcaagattcatattaagcaatatattggttatcagta |
42017813 |
T |
|
| Q |
501 |
tctcacattcctgcgagttgtatctcgattcgatataaaactgactcaatcgatatgaaattctagtgtctatctaatatgaatatgcttttcatcttaa |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42017812 |
tctcacattcctgcgagttgtatctcgattcgatataaaactgactcaaccgatacgaaattctagtgtatatctaatatgaatatgcttttcatcttaa |
42017713 |
T |
|
| Q |
601 |
atctgattcgtcatgatggaatctcaattccaattcattatgatgtatatcaattcactattatgaaccctgataca--ctaataaaatcactacctaaa |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42017712 |
atctgattcgtcatgatggaatctcaattccaattcattatgatgtatctcaattcactatgatgaaccctgatacactctaataaaatcactacctaaa |
42017613 |
T |
|
| Q |
699 |
cttagtgtagccaaccactctttatgacaactttgcatagtcagccacttttcaattgacatttgatttacaacttgaatcctgaattatttttaggcta |
798 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42017612 |
cttagtgtagccaaccactttttttgacaactttgcatagtcagccacttttcaattgacatttgatttacaacttgaatcctgaattatttttaggcta |
42017513 |
T |
|
| Q |
799 |
gtagatgatatatcagcttatgattgtgctatgttacttgtttttacttaaaagtgtaatattgttattcaaatt |
873 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
42017512 |
gtagatgatatatcagcttatgattgtgctatgttacttgattttacttaaaagtgtaatatttttattcgaatt |
42017438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 726 - 851
Target Start/End: Original strand, 39646427 - 39646550
Alignment:
| Q |
726 |
caactttgcatagtcagccacttttcaattgacatttgatttacaacttgaatcctgaattatttttaggctagtagatgatatatcagcttatgattgt |
825 |
Q |
| |
|
|||||||| |||| ||||||||||| || ||||||||||| |||| |||| ||||| ||||| || |||||||||||| || || |||| | | |
|
|
| T |
39646427 |
caactttgtatagccagccacttttt--ttatcatttgatttaagacttcaatcttgaatcattttgagattagtagatgatacattagtttataggttt |
39646524 |
T |
|
| Q |
826 |
gctatgttacttgtttttacttaaaa |
851 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
39646525 |
gctatgttgcttgtttttacttaaaa |
39646550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 851
Target Start/End: Original strand, 5270583 - 5270676
Alignment:
| Q |
758 |
catttgatttacaacttgaatcctgaattatttttaggctagtagatgatatatcagcttatgattgtgctatgttacttgtttttacttaaaa |
851 |
Q |
| |
|
||||||||||| ||||||| | ||||||||| | | | | || |||||||| || ||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
5270583 |
catttgatttatgacttgaaccttgaattattctgaagttcatatatgatataccaacttataattctgctatgtcacttgtttttacttaaaa |
5270676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 653 - 791
Target Start/End: Original strand, 5912567 - 5912705
Alignment:
| Q |
653 |
attcactattatgaaccctgatacact-aataaaatcactacctaaacttagtgtagccaaccactctttatgacaactttgcatagtcagccacttttc |
751 |
Q |
| |
|
||||||||| ||||| |||||| || | ||| |||||||||||||||||||||||| || ||||| ||| || |||||||| ||| || || |||||| |
|
|
| T |
5912567 |
attcactatgatgaatcctgattcattcaatcgaatcactacctaaacttagtgtagtcagccactattt-tgtcaactttgtataaccaaccccttttc |
5912665 |
T |
|
| Q |
752 |
aattgacatttgatttacaacttgaatcctgaattatttt |
791 |
Q |
| |
|
||| |||||||| || || ||||||| ||||||||||| |
|
|
| T |
5912666 |
ttttgtcatttgatatataatttgaatcttgaattatttt |
5912705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 819
Target Start/End: Original strand, 3469228 - 3469288
Alignment:
| Q |
758 |
catttgatttacaacttgaatcctgaattatttttaggctagtagatgatatatcagcttat |
819 |
Q |
| |
|
||||||||||| ||||||||| ||||||| || |||| ||||||||||||||| ||||||| |
|
|
| T |
3469228 |
catttgatttattacttgaatcttgaatta-ttctaggttagtagatgatatattagcttat |
3469288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 819
Target Start/End: Original strand, 2577995 - 2578056
Alignment:
| Q |
758 |
catttgatttacaacttgaatcctgaattatttttaggctagtagatgatatatcagcttat |
819 |
Q |
| |
|
||||||||||| |||| |||| | ||||||||| || |||||||||||||||| ||||||| |
|
|
| T |
2577995 |
catttgatttatgactttaatcttcaattattttgagactagtagatgatatattagcttat |
2578056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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