View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3183_low_2 (Length: 668)

Name: NF3183_low_2
Description: NF3183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3183_low_2
NF3183_low_2
[»] chr8 (1 HSPs)
chr8 (22-658)||(28430725-28431366)
[»] chr5 (17 HSPs)
chr5 (24-166)||(13373003-13373145)
chr5 (24-142)||(13378823-13378941)
chr5 (22-168)||(13426150-13426296)
chr5 (443-595)||(13453427-13453579)
chr5 (521-605)||(13385827-13385911)
chr5 (22-106)||(13385521-13385605)
chr5 (22-106)||(13389342-13389426)
chr5 (22-106)||(13412976-13413060)
chr5 (522-605)||(13389654-13389737)
chr5 (22-64)||(13446914-13446956)
chr5 (524-606)||(13411373-13411455)
chr5 (22-130)||(13419297-13419405)
chr5 (531-606)||(13378516-13378591)
chr5 (22-167)||(13393749-13393894)
chr5 (461-554)||(13412715-13412808)
chr5 (524-576)||(13394054-13394106)
chr5 (494-554)||(13425953-13426013)
[»] chr4 (1 HSPs)
chr4 (461-576)||(47600861-47600976)


Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 22 - 658
Target Start/End: Original strand, 28430725 - 28431366
Alignment:
Q  22 ttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttgg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28430725 ttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttgg 28430824  T
Q  122 agctgactcatttgttgttagcagtgaacaagatcaaatgcaggtatgtatctactatattagagtaattatgatcaatttttgaattctttttaggctt 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28430825 agctgactcatttgtggttagcagtgaacaagatcaaatgcaggtatgtatctactatattagagtaattatgatcaatttttcaattctttttaggctt 28430924  T
Q  222 aattatcctattctcatagaaacggaccttcataatcgaccgaaatttgaactcaagttcaattaagatagaattaattccaatcactcgagttcggttg 321  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28430925 aattatcctattctcatagaaacggaccttgataatcgaccgaaatttgaactcaagttcaattaagatagaattaactccaatcactcgagttcggttg 28431024  T
Q  322 ttacatgattactagatccctctaaaaactaacgaaat--nnnnnnnnnttacatgaaggtgacaatacattta--tttattagcttgaaaccaaacaca 417  Q
    |||||||||||||||||||||||||| |||||||||||           ||||||||||||||| |||||||||  ||||||||||||||||||||||||    
T  28431025 ttacatgattactagatccctctaaagactaacgaaataaataaaaaatttacatgaaggtgaccatacatttatttttattagcttgaaaccaaacaca 28431124  T
Q  418 tttataatgtctccttctttctatttaggctgcaacgggcaccttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggt 517  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  28431125 tttataatgtctccttctttttatttaggctgcaacgggcaccttggatggtatcattgacacagtttctgccgtccatcctttgttacctttgattggt 28431224  T
Q  518 cttctgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagcacatgcaaaata 617  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28431225 cttttgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagctcatgcaaaata 28431324  T
Q  618 ataca-nnnnnnnnataaagtacacttgtcattgagcctatg 658  Q
    |||||         ||||||||||||||||||||||||||||    
T  28431325 atacatttttttttataaagtacacttgtcattgagcctatg 28431366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 9e-44; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 13373145 - 13373003
Alignment:
Q  24 ggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggag 123  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||   | ||||    
T  13373145 ggtcatatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaacaaaaagaaggaagccattgaacacttaggag 13373046  T
Q  124 ctgactcatttgttgttagcagtgaacaagatcaaatgcaggt 166  Q
    ||||||||||||| ||||||   |||||||| |||||||||||    
T  13373045 ctgactcatttgtggttagccacgaacaagaccaaatgcaggt 13373003  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 13378941 - 13378823
Alignment:
Q  24 ggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggag 123  Q
    ||||||||||||||||| || |||||||| ||||||| ||||||||| ||| | || |||||||||||||||||||||||||| |||||||   | ||||    
T  13378941 ggtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagccattgaacgcttaggag 13378842  T
Q  124 ctgactcatttgttgttag 142  Q
    |||||||||| || |||||    
T  13378841 ctgactcattcgtggttag 13378823  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 13426296 - 13426150
Alignment:
Q  22 ttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttgg 121  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || || |||| |||| | |||||||| || |||| | | ||    
T  13426296 ttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttagg 13426197  T
Q  122 agctgactcatttgttgttagcagtgaacaagatcaaatgcaggtat 168  Q
    ||||||||| ||| | || ||| | || | |||||| ||||||||||    
T  13426196 agctgactcgtttctagtaagccgcgatccagatcagatgcaggtat 13426150  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 443 - 595
Target Start/End: Complemental strand, 13453579 - 13453427
Alignment:
Q  443 taggctgcaacgggcaccttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttg 542  Q
    |||||||||||||  || |||||||||||  | ||||||||||| || |  |||||  | |||||| |||||||| | || || ||||||||||| ||||    
T  13453579 taggctgcaacggctactttggatggtattatcgacacagtttcagcggatcatccgctattacctctgattggtttactcaagtctcatggaaagcttg 13453480  T
Q  543 ttatggttggtgcacctgagaagcctctggagctaccagtatttcctttactt 595  Q
    | ||||||||||||||||| |||||||| ||||| || || ||||||||||||    
T  13453479 taatggttggtgcacctgaaaagcctctagagcttcctgtttttcctttactt 13453427  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 521 - 605
Target Start/End: Original strand, 13385827 - 13385911
Alignment:
Q  521 ctgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagc 605  Q
    ||||| ||||||||||||||||| |||||||||| |||||| |||||||||||| | || || ||||||||| || |||||||||    
T  13385827 ctgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctctggagatccccgtctttcctttaattttgggtaagc 13385911  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 13385521 - 13385605
Alignment:
Q  22 ttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagc 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||| || || || ||||| || ||| ||| |||| | ||||||||    
T  13385521 ttggtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaaaggaagc 13385605  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 13389342 - 13389426
Alignment:
Q  22 ttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagc 106  Q
    ||||||| ||||||||||||||||||||||| |||||||| |  |||||||||||||| || || || |||||| |||| |||||    
T  13389342 ttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagc 13389426  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 13413060 - 13412976
Alignment:
Q  22 ttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagc 106  Q
    |||| ||||||||||||||||||||||||||||| |||||||| || || || ||||| || || ||||||||| | ||||||||    
T  13413060 ttggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaagaaaaggaagc 13412976  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 522 - 605
Target Start/End: Original strand, 13389654 - 13389737
Alignment:
Q  522 tgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagc 605  Q
    |||| ||||||||||||||||| |||||||||| |||||| |||||| ||||| | || || ||||||||| || |||||||||    
T  13389654 tgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctttggagatccccgtctttcctttaattttgggtaagc 13389737  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 13446956 - 13446914
Alignment:
Q  22 ttggtcatatggctgtgaaatttgccaaagcttttggtgctaa 64  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  13446956 ttggtcatatggctgtgaaatttgctaaagcttttggtgctaa 13446914  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 606
Target Start/End: Original strand, 13411373 - 13411455
Alignment:
Q  524 aaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagca 606  Q
    |||||||||||||| |||||  |||||||||| || ||||||||||| ||| |||||| ||  ||||||||  ||||||||||    
T  13411373 aaatctcatggaaagcttgtattggttggtgccccagagaagcctcttgagttaccagcatggcctttactagtgggtaagca 13411455  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 13419405 - 13419297
Alignment:
Q  22 ttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttgg 121  Q
    |||| |||||||||||||||||||| |||||||| |||||||| || || || ||||| || || ||| ||||| | |||||||| || ||||   | ||    
T  13419405 ttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaaggaagcaatagaacacttggg 13419306  T
Q  122 agctgactc 130  Q
    |||||||||    
T  13419305 agctgactc 13419297  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 606
Target Start/End: Complemental strand, 13378591 - 13378516
Alignment:
Q  531 atggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagca 606  Q
    |||| ||||||||||||||||| || || ||||||||| ||||| | ||||||||| ||||  || ||||||||||    
T  13378591 atggtaaacttgttatggttggagctccagagaagcctttggagtttccagtattttctttgattgtgggtaagca 13378516  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 13393749 - 13393894
Alignment:
Q  22 ttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttgg 121  Q
    |||||||  ||| |||||| ||||| ||||||||||| ||||| |||||||| ||||| || || || |||||| |||| ||||| || |||   || ||    
T  13393749 ttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaagcaatagaaaacctagg 13393848  T
Q  122 agctgactcatttgttgttagcagtgaacaagatcaaatgcaggta 167  Q
    |||||| |||||| || | ||   ||| |||||| |||||||||||    
T  13393849 agctgattcatttcttataagtcatgaccaagataaaatgcaggta 13393894  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 554
Target Start/End: Complemental strand, 13412808 - 13412715
Alignment:
Q  461 ttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttgttatggttggtg 554  Q
    |||||||||||  ||||||||||||| || || |||||| | |||||  ||||||||||  |||| ||||||||||| ||| | ||| ||||||    
T  13412808 ttggatggtattattgacacagtttcagctgttcatcctctcttaccaatgattggtctcttgaagtctcatggaaagcttataatgcttggtg 13412715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 576
Target Start/End: Original strand, 13394054 - 13394106
Alignment:
Q  524 aaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagct 576  Q
    |||| ||| ||||||||||| ||||| ||||||||||| ||||||| ||||||    
T  13394054 aaatatcacggaaaacttgtaatggtcggtgcacctgacaagcctccggagct 13394106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 13426013 - 13425953
Alignment:
Q  494 catcctttgttacctttgattggtcttctgaaatctcatggaaaacttgttatggttggtg 554  Q
    |||||| | ||||| ||||||||| |  |||||||| ||||||||||||| ||||||||||    
T  13426013 catcctatcttaccattgattggtttattgaaatctaatggaaaacttgtaatggttggtg 13425953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 461 - 576
Target Start/End: Complemental strand, 47600976 - 47600861
Alignment:
Q  461 ttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttgttatggttggtgcacctg 560  Q
    |||||||||||| ||||||||||||| || |  |||||| | | |||| | |||||  | ||||| ||||||||||||||||| ||||||||||| || |    
T  47600976 ttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaacttgtaatggttggtgctccag 47600877  T
Q  561 agaagcctctggagct 576  Q
     |||||||||||||||    
T  47600876 cgaagcctctggagct 47600861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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