View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3183_low_8 (Length: 279)

Name: NF3183_low_8
Description: NF3183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3183_low_8
NF3183_low_8
[»] chr5 (9 HSPs)
chr5 (142-266)||(29568361-29568485)
chr5 (142-266)||(29168239-29168363)
chr5 (143-266)||(1758133-1758256)
chr5 (143-266)||(29425281-29425404)
chr5 (143-250)||(29569708-29569815)
chr5 (142-250)||(27918634-27918742)
chr5 (22-65)||(1758024-1758067)
chr5 (22-65)||(29568559-29568602)
chr5 (26-65)||(29569867-29569906)
[»] chr4 (8 HSPs)
chr4 (143-271)||(27521322-27521450)
chr4 (143-266)||(18986085-18986208)
chr4 (148-266)||(27461990-27462108)
chr4 (148-266)||(27482129-27482247)
chr4 (22-65)||(27461876-27461919)
chr4 (22-65)||(27482015-27482058)
chr4 (22-65)||(27521516-27521559)
chr4 (22-65)||(18985976-18986019)
[»] chr3 (2 HSPs)
chr3 (142-250)||(25518468-25518576)
chr3 (22-65)||(25518357-25518400)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 29568485 - 29568361
Alignment:
Q  142 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568485 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 29568386  T
Q  242 aatgctcttagccactgtgtctctg 266  Q
    ||||||||||||| |||||||||||    
T  29568385 aatgctcttagccgctgtgtctctg 29568361  T

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Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 142 - 266
Target Start/End: Original strand, 29168239 - 29168363
Alignment:
Q  142 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 241  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29168239 ttctgctcaccaactatcatccaataagcattctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtggg 29168338  T
Q  242 aatgctcttagccactgtgtctctg 266  Q
    ||||||||||||  |||||||||||    
T  29168339 aatgctcttagctgctgtgtctctg 29168363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 1758133 - 1758256
Alignment:
Q  143 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 242  Q
    ||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1758133 tctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgcggga 1758232  T
Q  243 atgctcttagccactgtgtctctg 266  Q
    |||||||||||| |||||||||||    
T  1758233 atgctcttagccgctgtgtctctg 1758256  T

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Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 29425281 - 29425404
Alignment:
Q  143 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 242  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  29425281 tctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtggga 29425380  T
Q  243 atgctcttagccactgtgtctctg 266  Q
    |||||||||||| |||||||||||    
T  29425381 atgctcttagccgctgtgtctctg 29425404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 29569815 - 29569708
Alignment:
Q  143 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 242  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29569815 tctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggca 29569716  T
Q  243 atgctctt 250  Q
    ||||||||    
T  29569715 atgctctt 29569708  T

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Target: chr5; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 27918634 - 27918742
Alignment:
Q  142 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 241  Q
    |||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27918634 ttctgctcaccaactatcatccaagaagcattcttctggcgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggc 27918733  T
Q  242 aatgctctt 250  Q
    || ||||||    
T  27918734 aacgctctt 27918742  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 1758024 - 1758067
Alignment:
Q  22 catgttgatccctcacaaacagaaacaatccatgattattccaa 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1758024 catgttgatccctcacaaacagaaacaatccatgattattccaa 1758067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 29568602 - 29568559
Alignment:
Q  22 catgttgatccctcacaaacagaaacaatccatgattattccaa 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29568602 catgttgatccctcacaaacagaaacaatccatgattattccaa 29568559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 29569906 - 29569867
Alignment:
Q  26 ttgatccctcacaaacagaaacaatccatgattattccaa 65  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  29569906 ttgatccctcacaaacacaaacaatccatgattattccaa 29569867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 27521450 - 27521322
Alignment:
Q  143 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 242  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  27521450 tctgcccaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcggga 27521351  T
Q  243 atgctcttagccactgtgtctctgctcct 271  Q
    |||||||||||| ||||||||||| ||||    
T  27521350 atgctcttagccgctgtgtctctgatcct 27521322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 18986085 - 18986208
Alignment:
Q  143 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 242  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18986085 tctgctcaccaaccgtcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacactttctttcagtctccgtggga 18986184  T
Q  243 atgctcttagccactgtgtctctg 266  Q
    || ||||||||| |||||||||||    
T  18986185 atactcttagccgctgtgtctctg 18986208  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 27461990 - 27462108
Alignment:
Q  148 tcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgct 247  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  27461990 tcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatgct 27462089  T
Q  248 cttagccactgtgtctctg 266  Q
    ||||||| |||||||||||    
T  27462090 cttagccgctgtgtctctg 27462108  T

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Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 27482129 - 27482247
Alignment:
Q  148 tcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgct 247  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  27482129 tcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacaattcctttcagtctccgcgggaatgct 27482228  T
Q  248 cttagccactgtgtctctg 266  Q
    ||||||| |||||||||||    
T  27482229 cttagccgctgtgtctctg 27482247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 27461876 - 27461919
Alignment:
Q  22 catgttgatccctcacaaacagaaacaatccatgattattccaa 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27461876 catgttgatccctcacaaacagaaacaatccatgattattccaa 27461919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 27482015 - 27482058
Alignment:
Q  22 catgttgatccctcacaaacagaaacaatccatgattattccaa 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27482015 catgttgatccctcacaaacagaaacaatccatgattattccaa 27482058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 27521559 - 27521516
Alignment:
Q  22 catgttgatccctcacaaacagaaacaatccatgattattccaa 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27521559 catgttgatccctcacaaacagaaacaatccatgattattccaa 27521516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 18985976 - 18986019
Alignment:
Q  22 catgttgatccctcacaaacagaaacaatccatgattattccaa 65  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  18985976 catggtgatccctcacaaacagaaacaatccatgattattccaa 18986019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 25518468 - 25518576
Alignment:
Q  142 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 241  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  25518468 ttctcctcaccaaccatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcgtggt 25518567  T
Q  242 aatgctctt 250  Q
    |||||||||    
T  25518568 aatgctctt 25518576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 25518357 - 25518400
Alignment:
Q  22 catgttgatccctcacaaacagaaacaatccatgattattccaa 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25518357 catgttgatccctcacaaacagaaacaatccatgattattccaa 25518400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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