View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_17 (Length: 443)
Name: NF3184_high_17
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 225 - 427
Target Start/End: Original strand, 44668578 - 44668774
Alignment:
| Q |
225 |
ctgattatagtgctaatgaataattgtgttttcttggtaattaaaagatgatattttgatagaaccaaataactaggtagaagttaattgaaacttttat |
324 |
Q |
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| T |
44668578 |
ctgattatagtgctaatgaataaccgtgtttccttagtaattaaaagattatattttgatagaaccaaataactaggtacaagttagttgaaa--attat |
44668675 |
T |
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| Q |
325 |
accgtaaccccaaaccaaagcctttggtaaggatcaggaggagtacccgaagtttgaaactaagttaggtaaatatttatttgtgaaggttgtaaggtag |
424 |
Q |
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| T |
44668676 |
accgttaccccaaaccaaagcctttaataaggatc---aagagtaccctaagtttgaaactaagtta-gtacatctttatttgtgaaggttgtgaggtag |
44668771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 44668454 - 44668557
Alignment:
| Q |
61 |
agatgaaatgataattatgctttaatttaaacttaaactagtttgaaagtattttattcaaataaatattatgtaagatctttatggtaattacttgtca |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||||||||| |
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| T |
44668454 |
agatgaaatgataattatgctttaatttaaacttaaactagtttgaaattattttaaccaaataaatattatgtaagatctttattg---ttacttgtca |
44668550 |
T |
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| Q |
161 |
aattgct |
167 |
Q |
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||||||| |
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| T |
44668551 |
aattgct |
44668557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 44668384 - 44668438
Alignment:
| Q |
22 |
gtataagaatttaggaacaaaatatgttttaaaagtaatagatgaaatgataatt |
76 |
Q |
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| T |
44668384 |
gtataagaatttaggtatagaccatgttttaaatgtaatagatgaaatgataatt |
44668438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 12529261 - 12529119
Alignment:
| Q |
22 |
gtataagaatttaggaacaaaatatgttttaaaagtaatagatgaaatgataattatgctttaatttaaacttaaactagtttgaaagtattttattcaa |
121 |
Q |
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||||||||||||||| | | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
12529261 |
gtataagaatttaggtatagaccatgttttaaatgtaatagatgaaatgataattatgctttaatttaaacttaaactagtttgaaattattttaaacaa |
12529162 |
T |
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| Q |
122 |
ataaatattatgtaagatctttatggtaattacttgtcaaattgct |
167 |
Q |
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| T |
12529161 |
ataaatattatgtaagatctttattg---ttacttgtcaaattgct |
12529119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 225 - 427
Target Start/End: Complemental strand, 12529098 - 12528898
Alignment:
| Q |
225 |
ctgattatagtgctaatgaataattgtgttttcttggtaattaaaagatgatattttgatagaaccaaataactaggtagaagttaattgaaacttttat |
324 |
Q |
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||||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||| | |||||| |||||| |||| |
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| T |
12529098 |
ctgattatagtgctaatgaataaccgtgtttccttagtaattaaaagattatattttgatagaaccaaataactaggcacaagttagttgaaa--attat |
12529001 |
T |
|
| Q |
325 |
accgtaaccccaaaccaaagccttt----ggtaaggatcaggaggagtacccgaagtttgaaactaagttaggtaaatatttatttgtgaaggttgtaag |
420 |
Q |
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| T |
12529000 |
accgtaacttcaaaccaaagcctttaatatataaggatc---aagagtaccctaagtttgaaactatgtta-gtacatctttatttgttaaggttgtgag |
12528905 |
T |
|
| Q |
421 |
gtagtat |
427 |
Q |
| |
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||||||| |
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| T |
12528904 |
gtagtat |
12528898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 14097778 - 14097817
Alignment:
| Q |
377 |
tttgaaactaagttaggtaaatatttatttgtgaaggttgt |
417 |
Q |
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| T |
14097778 |
tttgaaactaagtt-ggtaaatttttatttgtgaaggttgt |
14097817 |
T |
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