View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3184_high_22 (Length: 411)

Name: NF3184_high_22
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3184_high_22
NF3184_high_22
[»] chr6 (3 HSPs)
chr6 (15-411)||(12230388-12230784)
chr6 (375-408)||(27894076-27894109)
chr6 (375-411)||(7148693-7148729)
[»] chr1 (1 HSPs)
chr1 (375-411)||(33975597-33975633)
[»] chr8 (4 HSPs)
chr8 (377-411)||(21653108-21653142)
chr8 (377-411)||(27028858-27028892)
chr8 (377-406)||(37334716-37334745)
chr8 (375-411)||(8558687-8558723)
[»] chr5 (1 HSPs)
chr5 (378-411)||(3970690-3970723)
[»] chr2 (2 HSPs)
chr2 (377-410)||(9174843-9174876)
chr2 (375-407)||(9595289-9595321)
[»] chr7 (1 HSPs)
chr7 (371-411)||(48131580-48131620)
[»] chr4 (2 HSPs)
chr4 (375-411)||(6987748-6987784)
chr4 (371-411)||(47970323-47970363)
[»] chr3 (1 HSPs)
chr3 (375-407)||(25866970-25867002)


Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 411
Target Start/End: Complemental strand, 12230784 - 12230388
Alignment:
Q  15 gacacgacacctacactgacacgtaggcaggactcttaacaattctttttgtttgatgcattatgtgcaggctcgcgataggatgtacgacatgttggat 114  Q
    |||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12230784 gacacgacgcctatactaacacgtaggcaggactcttaacaattctttttgtttgatgcattatgtgcaggcccgcgataggatgtacgacatgttggat 12230685  T
Q  115 tccgtaatttcaaggaggagaaatggtcaagattttcaacaggatttcttagagtccttaattatgaaacatagcagaaaatcagatggacaagaagaag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12230684 tccgtaatttcaaggaggagaaatggtcaagattttcaacaggatttcttagagtccttaattatgaaacatagcagaaaatcagatggacaagaagaag 12230585  T
Q  215 atgaaaataaacttactgataaacaattaaaagacaatgtattaactctgcttgttgctggccatgataccacaactgctgctcttacatggcttataaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12230584 atgaaaataaacttactgataaacaattaaaagacaatgtattaactctgcttgttgctggccatgataccacaactgctgctcttacatggcttatcaa 12230485  T
Q  315 atttcttgaagaaaatcaaaatgttctagaacaattgagagtaagcacctatttggcatttccataaactattttcagcttattttcataagctctc 411  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||||  |||||||||||||||||||||||||||||    
T  12230484 atttcttgaagaaaatcaaaatgttctcgaacaattgagagtaagcgcctgtttggcatgtccatactctattttcagcttattttcataagctctc 12230388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 27894109 - 27894076
Alignment:
Q  375 tccataaactattttcagcttattttcataagct 408  Q
    |||||||||| |||||||||||||||||||||||    
T  27894109 tccataaactgttttcagcttattttcataagct 27894076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 7148729 - 7148693
Alignment:
Q  375 tccataaactattttcagcttattttcataagctctc 411  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  7148729 tccataagctattttcaacttattttcataagctctc 7148693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 33975633 - 33975597
Alignment:
Q  375 tccataaactattttcagcttattttcataagctctc 411  Q
    |||||||||||||||||||||||||||||||||||||    
T  33975633 tccataaactattttcagcttattttcataagctctc 33975597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 411
Target Start/End: Complemental strand, 21653142 - 21653108
Alignment:
Q  377 cataaactattttcagcttattttcataagctctc 411  Q
    ||||| |||||||||||||||||||||||||||||    
T  21653142 cataagctattttcagcttattttcataagctctc 21653108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 411
Target Start/End: Complemental strand, 27028892 - 27028858
Alignment:
Q  377 cataaactattttcagcttattttcataagctctc 411  Q
    ||||| |||||||||||||||||||||||||||||    
T  27028892 cataagctattttcagcttattttcataagctctc 27028858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 37334716 - 37334745
Alignment:
Q  377 cataaactattttcagcttattttcataag 406  Q
    ||||||||||||||||||||||||||||||    
T  37334716 cataaactattttcagcttattttcataag 37334745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 8558723 - 8558687
Alignment:
Q  375 tccataaactattttcagcttattttcataagctctc 411  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  8558723 tccatcaactattttcagattattttcataagctctc 8558687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 411
Target Start/End: Original strand, 3970690 - 3970723
Alignment:
Q  378 ataaactattttcagcttattttcataagctctc 411  Q
    |||| |||||||||||||||||||||||||||||    
T  3970690 ataagctattttcagcttattttcataagctctc 3970723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 9174876 - 9174843
Alignment:
Q  377 cataaactattttcagcttattttcataagctct 410  Q
    ||||| ||||||||||||||||||||||||||||    
T  9174876 cataagctattttcagcttattttcataagctct 9174843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 9595321 - 9595289
Alignment:
Q  375 tccataaactattttcagcttattttcataagc 407  Q
    ||||| |||||||||||||||||||||||||||    
T  9595321 tccatgaactattttcagcttattttcataagc 9595289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 411
Target Start/End: Complemental strand, 48131620 - 48131580
Alignment:
Q  371 catttccataaactattttcagcttattttcataagctctc 411  Q
    ||||| |||||||||||||||||||||  ||||||||||||    
T  48131620 cattttcataaactattttcagcttatactcataagctctc 48131580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 6987748 - 6987784
Alignment:
Q  375 tccataaactattttcagcttattttcataagctctc 411  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  6987748 tccataaactattttcaacttatttccataagctctc 6987784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 411
Target Start/End: Complemental strand, 47970363 - 47970323
Alignment:
Q  371 catttccataaactattttcagcttattttcataagctctc 411  Q
    |||||||||||| | |||||||||||||| |||||||||||    
T  47970363 catttccataaattgttttcagcttatttgcataagctctc 47970323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 25866970 - 25867002
Alignment:
Q  375 tccataaactattttcagcttattttcataagc 407  Q
    |||||||||| ||||||||||||||||||||||    
T  25866970 tccataaactgttttcagcttattttcataagc 25867002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University