View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3184_high_23 (Length: 409)

Name: NF3184_high_23
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3184_high_23
NF3184_high_23
[»] chr4 (4 HSPs)
chr4 (208-408)||(8498336-8498536)
chr4 (318-385)||(27447495-27447562)
chr4 (318-382)||(27459834-27459898)
chr4 (324-388)||(48708983-48709047)
[»] chr8 (2 HSPs)
chr8 (324-388)||(14776624-14776688)
chr8 (324-388)||(11304668-11304732)
[»] chr5 (2 HSPs)
chr5 (324-388)||(23683530-23683594)
chr5 (324-388)||(23851217-23851281)
[»] chr3 (1 HSPs)
chr3 (324-388)||(11965974-11966038)
[»] chr2 (1 HSPs)
chr2 (305-373)||(41215800-41215868)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 208 - 408
Target Start/End: Original strand, 8498336 - 8498536
Alignment:
Q  208 ggatcaatctcatgtcagacttgattggtttcaacaaaggttcattgcccttcaattaccttggtgttccgattttcaagggtaagcaaaagagatcaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8498336 ggatcaatctcatgtcagacttgattggtttcaacaaaggttcattgcccttcaattaccttggtgttctgattttcaagggtaagcaaaagagatcaca 8498435  T
Q  308 tctttaaccgattgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatggagagtcaccttagtgaaagcaatcatt 407  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  8498436 tcttcaaccgattgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcaggaagagtcaccttagtgaaagcaatcatt 8498535  T
Q  408 c 408  Q
    |    
T  8498536 c 8498536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 27447495 - 27447562
Alignment:
Q  318 attgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatggagagt 385  Q
    |||| ||||||||| || |||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  27447495 attgcagataagataaagtctaagcttagtgcgtggaaagcttctcttctctctattgcagggagagt 27447562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 27459834 - 27459898
Alignment:
Q  318 attgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatggag 382  Q
    |||| ||||||||| || |||||||||||||| |||||||||| |||||||||||| ||| ||||    
T  27459834 attgcagataagataaagtctaagcttagtgcgtggaaagcttttcttctctctattgcagggag 27459898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 48708983 - 48709047
Alignment:
Q  324 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatggagagtcac 388  Q
    ||||||||||| ||||||||| ||||||||||||| |||||| | ||||| ||| ||||||||||    
T  48708983 gataagattaagtctaagcttggtgcttggaaagcctctcttttatctattgcagggagagtcac 48709047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 388
Target Start/End: Complemental strand, 14776688 - 14776624
Alignment:
Q  324 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatggagagtcac 388  Q
    ||||||||||| ||||||||| | |||||||||||||||||||| ||||| ||| ||||||||||    
T  14776688 gataagattaagtctaagcttggggcttggaaagcttctcttctatctattgcagggagagtcac 14776624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 11304668 - 11304732
Alignment:
Q  324 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatggagagtcac 388  Q
    ||||||||||| ||||||| | ||||||||||||| |||||| | ||||| ||| ||||||||||    
T  11304668 gataagattaagtctaagcatggtgcttggaaagcctctcttttatctattgcagggagagtcac 11304732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 23683530 - 23683594
Alignment:
Q  324 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatggagagtcac 388  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||| ||||| ||| ||||||||||    
T  23683530 gataagattaagtctaagcttggtgcttggaaagcctctcttctatctattgcagggagagtcac 23683594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 388
Target Start/End: Complemental strand, 23851281 - 23851217
Alignment:
Q  324 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatggagagtcac 388  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||| ||||| ||| ||||||||||    
T  23851281 gataagattaagtctaagcttggtgcttggaaagcctctcttctatctattgcagggagagtcac 23851217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 11965974 - 11966038
Alignment:
Q  324 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatggagagtcac 388  Q
    ||||||||||| ||||||||| ||||||||||||| |||||| | ||||| | | ||||||||||    
T  11965974 gataagattaagtctaagcttggtgcttggaaagcctctcttttatctattgtagggagagtcac 11966038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 41215868 - 41215800
Alignment:
Q  305 acatctttaaccgattgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctat 373  Q
    ||||||||||||||||| ||||| | | ||||| ||| | ||||| ||||||||||||||||| |||||    
T  41215868 acatctttaaccgattgcagatagggtaaaatccaagttgagtgcctggaaagcttctcttctatctat 41215800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University