View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_26 (Length: 400)
Name: NF3184_high_26
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 25 - 354
Target Start/End: Complemental strand, 51124537 - 51124221
Alignment:
| Q |
25 |
ttccaacattattggcattggattgagttgagcattctcaaacgtgccacgtaaattcatagattaattcgtacctagagaggagataattttcaaattt |
124 |
Q |
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| T |
51124537 |
ttccaacattattggcattggattgagttgagcattctcaaacgtgccacgtaaattcatagattaattcgtacctagagaggagataattttcaaattt |
51124438 |
T |
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| Q |
125 |
aataaaataaataaatatggataaaggttggtgatttgaaacatgagagagaagcatgaatggatccattttcgtgcaaatataattactcaatctgaat |
224 |
Q |
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| T |
51124437 |
aataaaaaaaataaatatggataaaggttggtgatttgaaacatga-------------atggatccattttcgtgcaaatataattactcaatctgtat |
51124351 |
T |
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| Q |
225 |
agaattataatggacaattgtttagactaatcgatacatttttaaagttaaatttgacctcgtgatcatatcttatgctaaaagatagttggaccatcaa |
324 |
Q |
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| T |
51124350 |
agaattacaatggacaattgtttagactaatcgatacatttttaaagttgaatttgaactcgtgatcacatcttatgctaaaagatagttggatcatcaa |
51124251 |
T |
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| Q |
325 |
ttcatatccaaactattgggtgaaaggatc |
354 |
Q |
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| T |
51124250 |
ttcatatccaaactcttggatgaaaggatc |
51124221 |
T |
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