View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3184_high_27 (Length: 391)

Name: NF3184_high_27
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3184_high_27
NF3184_high_27
[»] chr4 (8 HSPs)
chr4 (7-391)||(48912379-48912763)
chr4 (12-390)||(48957910-48958288)
chr4 (12-390)||(48965095-48965473)
chr4 (190-337)||(48974062-48974209)
chr4 (222-390)||(48961267-48961437)
chr4 (188-291)||(48951185-48951288)
chr4 (21-111)||(48967233-48967323)
chr4 (235-327)||(33396687-33396779)
[»] scaffold0536 (3 HSPs)
scaffold0536 (12-390)||(6546-6924)
scaffold0536 (12-390)||(10528-10906)
scaffold0536 (188-337)||(1541-1690)
[»] chr2 (3 HSPs)
chr2 (21-390)||(13448138-13448507)
chr2 (21-390)||(13439975-13440344)
chr2 (14-390)||(13454602-13454978)
[»] chr6 (2 HSPs)
chr6 (186-390)||(12590207-12590411)
chr6 (186-376)||(12483516-12483706)
[»] chr7 (1 HSPs)
chr7 (18-380)||(3417572-3417934)
[»] chr5 (2 HSPs)
chr5 (12-390)||(12540451-12540829)
chr5 (18-208)||(28385106-28385296)
[»] chr8 (2 HSPs)
chr8 (186-376)||(12641530-12641720)
chr8 (36-135)||(12641771-12641870)


Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 48912763 - 48912379
Alignment:
Q  7 tcgagtgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccat 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912763 tcgaatgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccat 48912664  T
Q  107 caatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccacccca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912663 caatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccacccca 48912564  T
Q  207 atcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtgg 306  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912563 atcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtgg 48912464  T
Q  307 aattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcat 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912463 aattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcat 48912379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 48957910 - 48958288
Alignment:
Q  12 tgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    |||||||| |||||||||| ||  ||  || |||| || || || |||||| ||||| | ||| |||||| ||||||||||||||||| |||||||||||    
T  48957910 tgagatgatccaccttcttgaacagctcgtgtagccttttctccgaactcttgagcacgctgtttgatttcctcagcttcatcaccaccgtccatcaatc 48958009  T
Q  112 gcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatccc 211  Q
     ||||||| |||| || ||| ||||  | |  || | ||||| | | ||| ||| |||  ||   | ||| || |||||||| |||||||||||||| ||    
T  48958010 tcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgcaccaacctccaccccaattcc 48958109  T
Q  212 atgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattc 311  Q
      |||| |  |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||| ||||| |||||||| |||    
T  48958110 tcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttc 48958209  T
Q  312 cacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatca 390  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||| ||| ||||| ||||| ||| |||| ||||    
T  48958210 cacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatca 48958288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 48965095 - 48965473
Alignment:
Q  12 tgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    ||||| || |||||||||| ||| ||  || |||| || || ||||||||| ||||| |   ||| ||||||||||||||||||||||||||||||||||    
T  48965095 tgagacgagccaccttcttgaatggctcgtctagccttttctccaaactcttgagcacgacttctaattttctcagcttcatcaccactgtccatcaatc 48965194  T
Q  112 gcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatccc 211  Q
     | ||||| ||||||| ||  |||| || |  |||| ||||||||||||  ||| ||||||    | |||||| |||||||| || ||||| ||||||||    
T  48965195 tcctcacagccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaacaccattctgttgcaccaacttccactccaatccc 48965294  T
Q  212 atgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattc 311  Q
      |||| | ||||||||  || || ||||| ||||||||||||||    ||||| || ||||| |||||||| |||| ||| ||||| || ||||| |||    
T  48965295 tcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcaccaacagcctccactgtggagttc 48965394  T
Q  312 cacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatca 390  Q
    || |||||||| |||||||| |||||||| || | |||||||||||||| |||||| |||||||||||| |||||||||    
T  48965395 caaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatca 48965473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 190 - 337
Target Start/End: Original strand, 48974062 - 48974209
Alignment:
Q  190 caccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcact 289  Q
    |||| |||||||| ||||| ||  ||||||| |||||||||||||| ||||| ||||||||  ||||||  |||||||||||||||||||||||||||||    
T  48974062 caccaacctccacaccaataccccgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcact 48974161  T
Q  290 aactgcctcaacagtggaattccacccacaatgtgtcataaatgcacc 337  Q
    ||| || || || ||||| |||||||| ||||||||||  ||||||||    
T  48974162 aacggcttccacggtggagttccacccgcaatgtgtcaagaatgcacc 48974209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 222 - 390
Target Start/End: Original strand, 48961267 - 48961437
Alignment:
Q  222 gttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtg--gaattccacccaca 319  Q
    |||||||||||||| ||||| |||||||||||||| |  ||||| || |||||||| | |||||||||| | |||||||  |||  || |||||||| ||    
T  48961267 gttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcactaccagcctcaatggtggagagttccacccgca 48961366  T
Q  320 atgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatca 390  Q
    ||| ||||||||  ||||||| |||||||||| ||| |||||||| ||||| ||||| |||||||| ||||    
T  48961367 atgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatca 48961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 291
Target Start/End: Original strand, 48951185 - 48951288
Alignment:
Q  188 tgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgca 287  Q
    |||||| || ||||| || |||||| |||| || ||||| | |||||||||||| || || || | ||||| ||||||||||||||| ||||||||| ||    
T  48951185 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca 48951284  T
Q  288 ctaa 291  Q
    ||||    
T  48951285 ctaa 48951288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 48967233 - 48967323
Alignment:
Q  21 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    |||||||||| || |||  || |||| || || ||||| ||||||||| |||||||||| ||||||||||||||  || ||||||||||||    
T  48967233 ccaccttcttgaagtgctcgtgtagccttttctccaaagtctcgagcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatc 48967323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 327
Target Start/End: Original strand, 33396687 - 33396779
Alignment:
Q  235 cattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtca 327  Q
    |||||||||||||||| |||| ||| ||||| || | |||||| | ||||||||| ||| | || |  || |||||||| |||||||||||||    
T  33396687 cattgtaaaattgttcaccatacattggccatgtcaccattggtaaccctgcactcactccttccaatgttgaattccatccacaatgtgtca 33396779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 6924 - 6546
Alignment:
Q  12 tgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    ||||||||||||||||||| |   ||||||||||| || |||||||||||||||||||  | | |||||||||||||||| |||||||  ||||||||||    
T  6924 tgagatgaaccaccttcttgagccgcatgtttagccttatccccaaactctcgagcatactttttgattttctcagcttcgtcaccaccatccatcaatc 6825  T
Q  112 gcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatccc 211  Q
     | ||||| ||||||||||| |||||||||  |||||||||||||| ||||||||||||||||  ||||| || | ||| || ||| |||||||||| |     
T  6824 tcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcg 6725  T
Q  212 atgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattc 311  Q
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  6724 tcgcacctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattc 6625  T
Q  312 cacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatca 390  Q
    ||||||||||| |||||||| |||||||  ||| ||||||||| ||||||||| ||||||||||||||| |||||||||    
T  6624 cacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatca 6546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 10906 - 10528
Alignment:
Q  12 tgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    ||||||||||||||||| | |   |||  |||||| || ||||||||||||||||||||| |||||||| |||||||| ||| || | ||||||||||||    
T  10906 tgagatgaaccaccttcctgagccgcacatttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatc 10807  T
Q  112 gcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatccc 211  Q
     |||||||||||||||||||  ||||||||  |||| ||||||| | ||||||||||||  |  || ||| ||   |||||| || ||| ||||||||||    
T  10806 tcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcccccccaatccc 10707  T
Q  212 atgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattc 311  Q
      |||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||    
T  10706 ccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattc 10607  T
Q  312 cacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatca 390  Q
    |||||||||||||||||||| ||||||||  | |||||||| |||||||||||||| || |||||||||||||||||||    
T  10606 cacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatca 10528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 337
Target Start/End: Complemental strand, 1690 - 1541
Alignment:
Q  188 tgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgca 287  Q
    ||||||||| ||||| ||||||||||||||||| ||||||||| | || || || ||||| || | ||| |  ||||| |||||||||||||  ||||||    
T  1690 tgcaccgacttccactccaatcccatgcacctgagttatcaacgtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgca 1591  T
Q  288 ctaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacc 337  Q
    ||||| |||||     | || ||||||||||||||||||| |||||||||    
T  1590 ctaacagcctcggttatagagttccacccacaatgtgtcaaaaatgcacc 1541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 390
Target Start/End: Original strand, 13448138 - 13448507
Alignment:
Q  21 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaa 120  Q
    |||||||||| ||| || ||| ||||||| || ||||||||||||||| || | ||||| || |||||||||||||||| ||||||||||| | | |||     
T  13448138 ccaccttcttgaatagcttgtatagctttttctccaaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacag 13448237  T
Q  121 ccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctg 220  Q
    ||||||| ||  |||| || |  || | ||||| ||| ||| | | |||| | || | |||||| ||||||||||| || || ||||| ||  | |  ||    
T  13448238 ccttctctatgctatctctgctcactaacttctttctctccgcgacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattg 13448337  T
Q  221 tgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaa 320  Q
    ||||||||  ||||||||||| ||||| |||||||| | ||||||||| ||||||||||| || |||||||| ||||| || || || |||| ||| |||    
T  13448338 tgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaa 13448437  T
Q  321 tgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatca 390  Q
    || ||||||||| | ||||| || | ||||||||  ||| |||||||||| ||||||||| |||| ||||    
T  13448438 tgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatca 13448507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 390
Target Start/End: Original strand, 13439975 - 13440344
Alignment:
Q  21 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaa 120  Q
    |||||||||| ||| || ||| |||| || || ||||||||| ||||| || | || || || | ||||||||||||| | |||||||||| | |||||     
T  13439975 ccaccttcttgaatagcttgtgtagccttttctccaaactcttgagcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacag 13440074  T
Q  121 ccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctg 220  Q
    ||||||| || |||||||| |  |||| ||||||||| ||| ||| |||| |  | | |||||||||||||||||| ||||| ||||| ||  | |  ||    
T  13440075 ccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaattcctcgaaattg 13440174  T
Q  221 tgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaa 320  Q
    ||||| ||  ||||| ||||| ||||| |||||||| | ||||||||| ||||||||||| || |||||||| | ||| ||| | || |||| ||| |||    
T  13440175 tgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaa 13440274  T
Q  321 tgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatca 390  Q
    || ||||||||| | ||||| || | ||||||||  ||| |||| ||||| |||||||||||||| ||||    
T  13440275 tgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatca 13440344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 390
Target Start/End: Original strand, 13454602 - 13454978
Alignment:
Q  14 agatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgc 113  Q
    |||||| ||||||| || ||| || ||| |||| || || ||||||||||||||| ||   ||||| || | |||||||||||||| | ||||||||| |    
T  13454602 agatgagccacctttttgaatagcttgtgtagccttttctccaaactctcgagcacgtaccctgatatttttagcttcatcaccaccgcccatcaatctc 13454701  T
Q  114 ttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccat 213  Q
     ||||| ||||||| ||  ||||  | |  |||| ||||||||| ||| ||| |||| |||| | |||||| ||||||||||| || |  ||||| ||      
T  13454702 ctcacagccttctctatgctatctttgctcaccaacttctctctctccgcaacaccacttgtacaccattctgttgcaccgacttcaattccaattcctc 13454801  T
Q  214 gcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattcca 313  Q
    | || |||||||| |  ||||| ||||| ||||| |||||||| |  |||||||| ||||||||||| ||    ||||| ||||| ||  | || ||||     
T  13454802 gaacttgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacgattgagttccc 13454901  T
Q  314 cccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatca 390  Q
    ||| ||||| ||||||||| | ||||| || | ||| ||||  ||| |||| ||||| ||||||||| |||| ||||    
T  13454902 cccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatca 13454978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 186 - 390
Target Start/End: Complemental strand, 12590411 - 12590207
Alignment:
Q  186 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg 285  Q
    |||||||| || ||||| ||||| |||||||| |  ||||||||||||||||||||||| ||||| |||| ||  ||||| |||||||| ||||  || |    
T  12590411 gttgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccag 12590312  T
Q  286 cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaat 385  Q
    ||||||| ||||| ||   ||||||||| ||||||||||||||||| || ||||| ||  ||||||||| |||||| || ||||| ||||||||| ||||    
T  12590311 cactaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaat 12590212  T
Q  386 aatca 390  Q
     ||||    
T  12590211 gatca 12590207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 186 - 376
Target Start/End: Complemental strand, 12483706 - 12483516
Alignment:
Q  186 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg 285  Q
    ||||||||||| ||||| ||||||||  |||| |  ||||| |  |||||||||||||| ||||| || || | |||||||||||||||||||| |||||    
T  12483706 gttgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctg 12483607  T
Q  286 cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagccca 376  Q
    ||||||| || || |||   |||||||| ||||| || ||||||||||||||||| || | |||||||| |||||  |||||||| |||||    
T  12483606 cactaaccgcttccacaacagaattccatccacagtgagtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgccca 12483516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 3417934 - 3417572
Alignment:
Q  18 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 117  Q
    ||||||||||||| ||| ||  ||||||| ||||| |||| |||||||||| || |||| ||    ||||| ||||||| |||||||||||||| | |||    
T  3417934 gaaccaccttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctca 3417835  T
Q  118 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcac 217  Q
       ||||||| || | ||| || |  |||| ||||| ||| ||||||||||||  ||  | |||||| |||||||| || ||||| ||||| ||  | ||    
T  3417834 ttgccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcggac 3417735  T
Q  218 ctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccaccca 317  Q
     |||||||| |  ||||||||| | ||||| ||||||||   ||||||||| ||||||||||| ||||||| ||| |||||||||   || |||| ||||    
T  3417734 ttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttcccccca 3417635  T
Q  318 caatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaaccc 380  Q
    ||||||||||||||| | || || || | ||||||||  |||  ||||||||| |||||||||    
T  3417634 caatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaaccc 3417572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 12540451 - 12540829
Alignment:
Q  12 tgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    ||||| ||||||||||||| ||  ||  || |||| ||||| |||| |||||| ||| || |||| || || |||||||||| |||||  ||||||||||    
T  12540451 tgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatc 12540550  T
Q  112 gcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatccc 211  Q
     | ||| | ||||||| ||   ||| || | ||||| ||||| ||| |||||| ||||| |||| | |||||| |||||||| || || || ||||| ||    
T  12540551 tcctcatagccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccattctgttgcacctacttctactccaattcc 12540650  T
Q  212 atgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattc 311  Q
      | ||||||||||| |  ||||| ||| | || || ||||||||   ||||||||| ||||||||||| || |||| ||| ||||| ||| | || ||     
T  12540651 tcggacctgtgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcccgcaccaacagcctctacaattgagttt 12540750  T
Q  312 cacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatca 390  Q
    | ||||||||||||||||||| | ||||| || | ||||||||  ||| |||||||||| ||||||||| |||| ||||    
T  12540751 cccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatca 12540829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 28385106 - 28385296
Alignment:
Q  18 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 117  Q
    ||||||||||||||||  ||  || |||| ||||| || |||||||||||| ||||||| || || ||||||||||| |||| ||||||||||  | |||    
T  28385106 gaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctca 28385205  T
Q  118 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaat 208  Q
     | ||||||| || ||||| || |  |||| ||||| ||| |||||| ||||| |||| | |||||||||| |||| || ||||| |||||    
T  28385206 tagccttctctatgttatctctgctcaccaacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaat 28385296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 376
Target Start/End: Complemental strand, 12641720 - 12641530
Alignment:
Q  186 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg 285  Q
    |||||||| ||||||||||||||||   ||||    ||||||| ||||||||| || || |||||||| ||||  ||||||||||||||||||| |||||    
T  12641720 gttgcacccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctg 12641621  T
Q  286 cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagccca 376  Q
    ||||||| ||||| ||   ||| ||| |||| ||||| ||||| ||||||||||| || | |||||| | |||||| || ||||| |||||    
T  12641620 cactaacagcctctaccaaggagttcgacccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggccca 12641530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 12641870 - 12641771
Alignment:
Q  36 gcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattat 135  Q
    |||||| |||| || | |||||||||| ||||| |||||||||||| || |||||||||||||  ||||||||||| | ||||| | ||||| ||| |||    
T  12641870 gcatgtgtagcctttttcccaaactcttgagcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctatactat 12641771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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