View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_28 (Length: 388)
Name: NF3184_high_28
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 35855873 - 35855512
Alignment:
| Q |
18 |
caatgtgtgctctgaaggtgtatgccaatgacattgtattagtttgtagtaagttccatttagattaagcttacctgcataacctttccattggagctgt |
117 |
Q |
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| T |
35855873 |
caatgtgtgctctgaaggtgtatgccaatgacattgtattagtttgtagtaagttccatttagattaagcttacctgcataacctttccattggagctgt |
35855774 |
T |
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| Q |
118 |
cgaaacattaagtacgtacgtatattagtctccttaagcaaaatgtgtatttataattgtttaattaaaaatgcacttagtggcttaccatgacatcatt |
217 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35855773 |
cgaaacattaagcacgta----tattagtctccttaagcaaaatgtgtatttataattgtttaattaaaaatgcacttagtggcttaccatgacatcatt |
35855678 |
T |
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| Q |
218 |
aaacctattctttaggaaagcaggacctagtttgtaatctttttcaagtttaccaagttgaggaagttcttgcacccttttgtttaggatatcaattgga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35855677 |
aaacctattctttaggaaagcaggacctagtttgtaatctttttcaagtttaccaagttgaggaagttcttgcacccttttgtttaggatatcaattgga |
35855578 |
T |
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| Q |
318 |
gattgtaattttccattcccacaaagtttccattctggtttcagattcccccaattctctgctcct |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
35855577 |
gattgtaattttccattcccacaaagtttccattctggtttcagattcccccagttctctggtcct |
35855512 |
T |
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