View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3184_high_29 (Length: 380)

Name: NF3184_high_29
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3184_high_29
NF3184_high_29
[»] chr4 (6 HSPs)
chr4 (91-326)||(25657847-25658082)
chr4 (5-87)||(25656432-25656514)
chr4 (198-296)||(1470468-1470567)
chr4 (198-287)||(6936100-6936190)
chr4 (201-272)||(43610034-43610106)
chr4 (222-287)||(31598696-31598761)
[»] chr7 (1 HSPs)
chr7 (193-297)||(20904340-20904445)
[»] chr2 (3 HSPs)
chr2 (193-294)||(10991079-10991181)
chr2 (160-296)||(26831851-26831988)
chr2 (193-296)||(30939046-30939150)
[»] chr1 (1 HSPs)
chr1 (234-285)||(25141309-25141360)
[»] chr6 (1 HSPs)
chr6 (225-296)||(31177968-31178039)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 91 - 326
Target Start/End: Original strand, 25657847 - 25658082
Alignment:
Q  91 gtaatatcttcaagggataaagaactatttgcacaatttacacaacttaactcatgatgnnnnnnngtttgtctatgatctgtaatttagaacgataact 190  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||    
T  25657847 gtaatatcttcaagggataaacagctatttgcacaatttacacaacttaactcatgatgtttttttgtttgtctatgatctgtaattcagaacgataact 25657946  T
Q  191 taagagaaagtaaaaccaatacaccaactatatcagtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcg 290  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||||||||    
T  25657947 taagagaaagtaaaaccaatacaccaactatattagtcacaagcaacaagactacataatttttcataattcattaacattaaatcaattcgacatttcg 25658046  T
Q  291 ttaacaacttaacactacacaactccccatttcttc 326  Q
    ||||||||||||||| |||||||||||| |||||||    
T  25658047 ttaacaacttaacaccacacaactccccctttcttc 25658082  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 25656432 - 25656514
Alignment:
Q  5 tgtccgcagacgagactaaaggcagctgtcggttagattgcgaaccaatataaaacataatgcgtctttatggtttaactcat 87  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| || |||||||    
T  25656432 tgtccgcagacgagactaaaggcagctgtcggtcagattgtgaaccaatataaaacataatgtgtctttatgattgaactcat 25656514  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 1470567 - 1470468
Alignment:
Q  198 aagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgttaaca 296  Q
    ||||||| | ||||||||||||||| || |||| | | ||||||| ||| |||| | ||||||||||||||||||||||||||||||||||  |||||||    
T  1470567 aagtaaaccgaatacaccaactataccaagtcatagataacaacattacctaatctttcataattcattaacattaaatcaattcgacattaagttaaca 1470468  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 6936100 - 6936190
Alignment:
Q  198 aagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatt 287  Q
    |||||||| ||||||| ||| |||| || |||| ||||||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||    
T  6936100 aagtaaaatcaatacatcaattataccaagtcataaacaacaacattacataatttttcatgattcattaatattaaatcaattcggcatt 6936190  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 43610106 - 43610034
Alignment:
Q  201 taaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacatta 272  Q
    ||||||||||||| |||||||| || |||| ||||||||||| | |||||||| |||| ||||||| ||||||    
T  43610106 taaaaccaatacatcaactataccaagtcataaacaacaacactccataatttgtcatgattcatttacatta 43610034  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 31598696 - 31598761
Alignment:
Q  222 atcagtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatt 287  Q
    |||||||| |||||| |||| |||||||| | ||| |||| || || |||||||||||||||||||    
T  31598696 atcagtcataaacaagaacaatacataatctttcacaattgatcaaaattaaatcaattcgacatt 31598761  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 20904340 - 20904445
Alignment:
Q  193 agagaaagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgt 291  Q
    |||| ||| |||||||||||||||||||||||| |||| ||   |||||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  20904340 agaggaagaaaaaccaatacaccaactatatcaagtcataagttacaacattgcataatttttcataattcattaacattaaatcaattcgacattacgt 20904439  T
Q  292 taacaa 297  Q
    ||||||    
T  20904440 taacaa 20904445  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 10991181 - 10991079
Alignment:
Q  193 agagaaagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgt 291  Q
    |||| |||||||| |||||||||||||||| || |||| || | | |||| |||||||||| ||||||||||||||||||||||||  |||||||| |||    
T  10991181 agaggaagtaaaaacaatacaccaactataccaagtcataagctataacattacataatttttcataattcattaacattaaatcagctcgacattgcgt 10991082  T
Q  292 taa 294  Q
    |||    
T  10991081 taa 10991079  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 296
Target Start/End: Original strand, 26831851 - 26831988
Alignment:
Q  160 tgtctatgatctgtaatttagaacgataacttaagagaaagtaaaaccaatacaccaactatatc-agtcacaaacaacaacagtacataatttctcata 258  Q
    ||||||||| |||||||| | ||||| || || |||| ||||| |||||||||||||| ||||   ||||| || |||||||| |||||||| | |||||    
T  26831851 tgtctatgacctgtaattcaaaacgacaatttcagaggaagtacaaccaatacaccaagtatacagagtcataagcaacaacattacataatctttcata 26831950  T
Q  259 attcattaacattaaatcaattcgacatttcgttaaca 296  Q
    ||||| ||||||||||| | ||| ||||| ||||||||    
T  26831951 attcaataacattaaattagttcaacattacgttaaca 26831988  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 30939150 - 30939046
Alignment:
Q  193 agagaaagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgt 291  Q
    |||| |||||||| |||||||| ||||||| || |||| || |||| ||| || ||||| | ||||||||||||| ||||||||||||| |||||| |||    
T  30939150 agaggaagtaaaatcaatacactaactataccaagtcataagcaaccacattatataatctatcataattcattagcattaaatcaatttgacattacgt 30939051  T
Q  292 taaca 296  Q
    |||||    
T  30939050 taaca 30939046  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 25141360 - 25141309
Alignment:
Q  234 caacaacagtacataatttctcataattcattaacattaaatcaattcgaca 285  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  25141360 caacaacactacataatttttcataattcattaacattaaatcaattcgaca 25141309  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 31178039 - 31177968
Alignment:
Q  225 agtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgttaaca 296  Q
    ||||| |||||| |||  |||||||||| |||  ||||||||||||||||||||||| ||||| ||| ||||    
T  31178039 agtcataaacaataacgttacataatttttcaagattcattaacattaaatcaattcaacattacgtgaaca 31177968  T

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