View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_30 (Length: 374)
Name: NF3184_high_30
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 16585317 - 16584964
Alignment:
| Q |
1 |
tgaaacaacaagaaaatattacattttccctttttatttcgtatttatcaaaaatcaatannnnnnnagaactaaacctacaaaatcatggatctagccg |
100 |
Q |
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| T |
16585317 |
tgaaacaacaagaaaatataacattttccctttttatttcgtatctatcaaaaatcaatatttttttagaactaaacctacaaaatcatggatctagccg |
16585218 |
T |
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| Q |
101 |
tttatatatctcaaatgaaaacaacattttgaaacattttaaaaatcactaaattttatgaaatgatctaaacatgaatatttttgcataataattctta |
200 |
Q |
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| T |
16585217 |
tttatatatctcaaatgaaaacaacattttgaaacattttaaaaatcactaaattttatgaaatgatctaaacatgaatatttttgcataataattctta |
16585118 |
T |
|
| Q |
201 |
caacaacgatcaacaacactttataaaagcgctttacgcaacaaagccagcaaaagt-tacaccctttaatagagttctaaaattgtgactttaagaggt |
299 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16585117 |
caacaacgatcaacaacactttaaaaaagcgcttcacgcaacaaagccagcaaaagtatacaccctttaatagggttctaaaattgtgactttaagaggt |
16585018 |
T |
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| Q |
300 |
aaaaagaggagtaatgtctctttgaaatctgatagatcatgtgtgggtaggtgg |
353 |
Q |
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| T |
16585017 |
aaaaagaggagtaatgtctctttgaaatctgatagatcatgtgtgggtaggtgg |
16584964 |
T |
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