View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3184_high_4 (Length: 618)
Name: NF3184_high_4
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_4 |
 | |
|
| [»] scaffold0508 (1 HSPs) |
| | |
|
| [»] scaffold0281 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 48297082 - 48296576
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48297082 |
tcatgttgccaccagatcacaactattttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtg |
48296983 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48296982 |
gcaaactttacaacttggacattcttgctttcaaagcaacaaaggacaacacttgtagctgtcaaagaagtgtcaaacagttgtaaaaacaagtggcctc |
48296883 |
T |
|
| Q |
201 |
caaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacat |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48296882 |
caaacttctacagcttgcattcacgtgtcaaccttttctctttgcaagtt-------ccagaacgttctggagaacattttgcatggacaaaatgcacat |
48296790 |
T |
|
| Q |
301 |
ttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
48296789 |
ttttctcattcttgcgcaccaagcaacaaaaacataagcacaggg-ctgtttttagcaaggaaaacacaactgtttttgtctttgaagctccaagtcttt |
48296691 |
T |
|
| Q |
401 |
cacctctataaatacaagcatacctcaatagtataaaaagggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaacaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48296690 |
cacctctataaatacaagcatacctcaatagtataaaaagggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaacaa |
48296591 |
T |
|
| Q |
501 |
agccttttttctttc |
515 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
48296590 |
agccttttttctttc |
48296576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 16282208 - 16281707
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16282208 |
tcatgttgccaccagatcacaactgtttttt--catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtg |
16282111 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
16282110 |
gcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaacaagtggcctc |
16282011 |
T |
|
| Q |
201 |
caaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||| | |
|
|
| T |
16282010 |
caaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcatgaacaaaattcactt |
16281911 |
T |
|
| Q |
301 |
ttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
400 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16281910 |
ttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
16281811 |
T |
|
| Q |
401 |
cacctctataaatacaagcatacctcaatagtataa--aaagggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaac |
498 |
Q |
| |
|
||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
16281810 |
cacctctataaatacaagcatacctcaatggcaaaaggggggggcttacacacaaagaattgaatctctcccaaagtgaaggtgctcactactttcaaac |
16281711 |
T |
|
| Q |
499 |
aaag |
502 |
Q |
| |
|
|||| |
|
|
| T |
16281710 |
aaag |
16281707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 16296412 - 16295911
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16296412 |
tcatgttgccaccagatcacaactgtttttt--catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtg |
16296315 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
16296314 |
gcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaacaagtggcctc |
16296215 |
T |
|
| Q |
201 |
caaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||| | |
|
|
| T |
16296214 |
caaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcatgaacaaaattcactt |
16296115 |
T |
|
| Q |
301 |
ttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
400 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16296114 |
ttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
16296015 |
T |
|
| Q |
401 |
cacctctataaatacaagcatacctcaatagtataa--aaagggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaac |
498 |
Q |
| |
|
||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
16296014 |
cacctctataaatacaagcatacctcaatggcaaaaggggggggcttacacacaaagaattgaatctctcccaaagtgaaggtgctcactactttcaaac |
16295915 |
T |
|
| Q |
499 |
aaag |
502 |
Q |
| |
|
|||| |
|
|
| T |
16295914 |
aaag |
16295911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 17463352 - 17463848
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17463352 |
tcatgttgccaccagatcacaactgtttttt--catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtg |
17463449 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
17463450 |
gcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaacaagtggcctc |
17463549 |
T |
|
| Q |
201 |
caaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| ||| | |
|
|
| T |
17463550 |
caaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacg------------ttctgcatgaacaaaattcactt |
17463637 |
T |
|
| Q |
301 |
ttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
400 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17463638 |
ttttctcattcttgcgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
17463737 |
T |
|
| Q |
401 |
cacctctataaatacaagcatacctcaatagtataaaaag-ggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaaca |
499 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
17463738 |
cacctctataaatacaagcatacctcaatggtaaaaggggaggcttacacacaaagaattgaatctctctcaaagtgaaggtgctcactactttctaaca |
17463837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 17589862 - 17589366
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17589862 |
tcatgttgccaccagatcacaactgtttttt--catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtg |
17589765 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
17589764 |
gcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaacaagtggcctc |
17589665 |
T |
|
| Q |
201 |
caaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||| ||| | |
|
|
| T |
17589664 |
caaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgt------------tctgcatgaacaaaattcactt |
17589577 |
T |
|
| Q |
301 |
ttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
400 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17589576 |
ttttctcattcttgcgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
17589477 |
T |
|
| Q |
401 |
cacctctataaatacaagcatacctcaatagtataaaaag-ggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaaca |
499 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
17589476 |
cacctctataaatacaagcatacctcaatggtaaaaggggaggcttacacacaaagaattgaatctctctcaaagtgaaggtgctcactactttctaaca |
17589377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 12593888 - 12594394
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaa-aggaaaggaacaacaagaatgttcttaataacattctccatgt |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
12593888 |
tcatgttgccaccagatcacaactgtttttt--catcacgtgtggttgcctcaaaaaaggaaaggaacaacaagaatgttcttaagaacattctccattt |
12593985 |
T |
|
| Q |
100 |
ggcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcct |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| | ||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
12593986 |
ggcaaattttacaacttggacactcttgctctcaaagcaaaaaaggacagcacttgtagcttttaaagaagcgccaaacagctgtaaaaacaagtggcct |
12594085 |
T |
|
| Q |
200 |
ccaaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcaca |
299 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
12594086 |
ccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcatgaacaaaattcact |
12594185 |
T |
|
| Q |
300 |
tttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtctt |
399 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12594186 |
tttttctcattcttgcgctccaagcaacaaaaacataaccacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtgaagctccaagtctt |
12594285 |
T |
|
| Q |
400 |
tcacctctataaatacaagcatacctcaat-agtataaaaagggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaac |
498 |
Q |
| |
|
| |||||||||||||||||||||||||||| | ||| |||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
12594286 |
ttacctctataaatacaagcatacctcaatgaaaatagggggggcttacacac--ataattgaatctctctcaaaatgaaggtgctcactactttcaaac |
12594383 |
T |
|
| Q |
499 |
aaagccttttt |
509 |
Q |
| |
|
||||| ||||| |
|
|
| T |
12594384 |
aaagctttttt |
12594394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 53 - 510
Target Start/End: Complemental strand, 17453869 - 17453423
Alignment:
| Q |
53 |
aaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacac |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
17453869 |
aaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcac |
17453770 |
T |
|
| Q |
153 |
ttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctccaaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttgg |
252 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
17453769 |
ttgtagctttcaaagaagtgccaaacagctgtaaaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattgg |
17453670 |
T |
|
| Q |
253 |
aagttccagaacgttctggagaacattctgcatggacaaaatgcacatttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgttt |
352 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
17453669 |
aagttccagaacgt------------tctgcatgaacaaaattcacttttttctcattcttgcgctccaagcaacaaaaacataagcacatgggctgttt |
17453582 |
T |
|
| Q |
353 |
ttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtctttcacctctataaatacaagcatacctcaatagtataaaaag-ggcttacacac |
451 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||| |
|
|
| T |
17453581 |
ttaacaaggaaaacacagctgtttttgtctgtgaagctccaagtctttcacctctataaatacaagcatacctcaatggtaaaaggggaggcttacacac |
17453482 |
T |
|
| Q |
452 |
aaagaattgaatctctctcaaagtgaatgtgctcactactttcaaacaaagcctttttt |
510 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
17453481 |
aaagaattgaatctctctcaaagtgaaggtgctcactactttctaacaaagcctttttt |
17453423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 34 - 515
Target Start/End: Complemental strand, 7343535 - 7343065
Alignment:
| Q |
34 |
catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtggcaaattttacaacttggacattcttgctctca |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||| |
|
|
| T |
7343535 |
catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtggcaaattttacaacttggatacttttgctctca |
7343436 |
T |
|
| Q |
134 |
aagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctccaaacttctacggcttgcattcacgtgtcaacc |
233 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| || |
|
|
| T |
7343435 |
aagcaacaaaggacaacacttgtagctttcaaagaagtgccaaacagctgtaaaaacaagtggcctccaaacttctacggcttgcatttacgcgtccaca |
7343336 |
T |
|
| Q |
234 |
ttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacatttttctcattcttgcgcaccaagcaacaaaaac |
333 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||| | ||||||||||||||| |
|
|
| T |
7343335 |
ttttctctttgcaaattggaagttccagaacgt------------tctgcatgaacaaaattcacttttttctcattcttgcactccaagcaacaaaaac |
7343248 |
T |
|
| Q |
334 |
ataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtctttcacctctataaatacaagcatacctcaatagta |
433 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7343247 |
ataagcacataggctgtttttagcaaggaaaacacagttgtttttgtctgtgaagttccaagtctttcacctctataaatacaagcatacctcaagggta |
7343148 |
T |
|
| Q |
434 |
taaaaagggcttacacac-aaagaattgaatctctctcaaagtgaatgtgctcactactttcaaacaaagccttttttctttc |
515 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7343147 |
aagtgggggcttacacacaaaagaattgaatctctctcaaagtgaaggtgctcactactttctaacaaagccttttttctttc |
7343065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 12584082 - 12584348
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12584082 |
tcatgttgccaccagatcacaactgtttttt--catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtg |
12584179 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
12584180 |
gcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaacaagtggcctc |
12584279 |
T |
|
| Q |
201 |
caaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttct |
269 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12584280 |
caaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttct |
12584348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 23602817 - 23602317
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23602817 |
tcatgttgccaccagatcacaactgtttttt--catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtg |
23602720 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
23602719 |
gcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaacaagtggcctc |
23602620 |
T |
|
| Q |
201 |
caaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||| | |
|
|
| T |
23602619 |
caaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcatgaacaaaattcactt |
23602520 |
T |
|
| Q |
301 |
ttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
400 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23602519 |
ttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
23602420 |
T |
|
| Q |
401 |
cacctctataaatacaagcatacctcaatagtataaaaag-ggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaaca |
499 |
Q |
| |
|
||||||||||||||||||||||||||||| | | || | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23602419 |
cacctctataaatacaagcatacctcaatggcaaaaggggaggcttacacacaaagaattgaatctctctcaaagtgaaggtgctcactactttcaaaca |
23602320 |
T |
|
| Q |
500 |
aag |
502 |
Q |
| |
|
||| |
|
|
| T |
23602319 |
aag |
23602317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 14337630 - 14337142
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14337630 |
tcatgttgccaccagatcacaactgtttttt--catcacatgtggttgtctaaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtg |
14337533 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
14337532 |
gcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaacaagtggcctc |
14337433 |
T |
|
| Q |
201 |
caaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||| ||| | |
|
|
| T |
14337432 |
caaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgt------------tctgcatgaacaaaattcactt |
14337345 |
T |
|
| Q |
301 |
ttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
400 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14337344 |
ttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
14337245 |
T |
|
| Q |
401 |
cacctctataaatacaagcatacctcaatagtataaaaag-ggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaaca |
499 |
Q |
| |
|
||||||||||||||||||||||||||||| | | || || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14337244 |
cacctctataaatacaagcatacctcaatggcaaaaggagatgcttacacacaaagaattgaatctctctcaaagtgaaggtgctcactactttcaaaca |
14337145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 23593896 - 23593508
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23593896 |
tcatgttgccaccagatcacaactgtttttt--catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtg |
23593799 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
23593798 |
gcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaaaaagtgccaaacagctgtaaaaacaagtggcctc |
23593699 |
T |
|
| Q |
201 |
caaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||||||| ||| | |
|
|
| T |
23593698 |
caaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaatgttctggagaacgttctgcatgaacaaaattcactt |
23593599 |
T |
|
| Q |
301 |
ttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctc |
391 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23593598 |
ttttctaattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtgaagctc |
23593508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Original strand, 13553809 - 13554309
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13553809 |
tcatgttgccaccagatcacaactgtttttt--catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtg |
13553906 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
13553907 |
gcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaacaagtggcctc |
13554006 |
T |
|
| Q |
201 |
caaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||| | |
|
|
| T |
13554007 |
caaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcatgaacaaaattcactt |
13554106 |
T |
|
| Q |
301 |
ttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
400 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13554107 |
ttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctatttttgtctgtgaagctccaagtcttt |
13554206 |
T |
|
| Q |
401 |
cacctctataaatacaagcatacctcaatag-tataaaaagggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaaca |
499 |
Q |
| |
|
||||||||||||||||||||||||||||| | || | | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13554207 |
cacctctataaatacaagcatacctcaatggctaaaggagaggcttacacacaaagaattgaatctctctcaaagtgaaggtgctcactactttcaaaca |
13554306 |
T |
|
| Q |
500 |
aag |
502 |
Q |
| |
|
||| |
|
|
| T |
13554307 |
aag |
13554309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 54624121 - 54624197
Alignment:
| Q |
308 |
attcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgt |
384 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||||||| |||||||| | ||||| ||||||||||| ||||||||| |
|
|
| T |
54624121 |
attcttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttgtctgt |
54624197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 17530455 - 17530379
Alignment:
| Q |
319 |
ccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaag |
395 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| | ||||| |||||| |||| ||||||||| ||||| |||| |
|
|
| T |
17530455 |
ccaagctacaaaaacataagcacatgggctgtttttggaaaggacaacacaactgtatttgtctgtcaagcttcaag |
17530379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 17535394 - 17535318
Alignment:
| Q |
319 |
ccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaag |
395 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| | ||||| |||||| |||| ||||||||| ||||| |||| |
|
|
| T |
17535394 |
ccaagctacaaaaacataagcacatgggctgtttttggaaaggacaacacaactgtatttgtctgtcaagcttcaag |
17535318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 48978258 - 48978337
Alignment:
| Q |
311 |
cttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagct |
390 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| |||||||| | ||||| ||||||||||| ||| ||||| ||||| |
|
|
| T |
48978258 |
cttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgtcaagct |
48978337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 13459216 - 13459716
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13459216 |
tcatgttgccaccagatcacaacttttttttttcatcacgcgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtg |
13459315 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaacaagtggcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| || |||||| |
|
|
| T |
13459316 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggaaaacacttgtagctttcaaagaagtgtcaaacagttgtaaaaa-aaacggcctc |
13459414 |
T |
|
| Q |
201 |
caaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||| |
|
|
| T |
13459415 |
caaacttctacagcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacg------------ttatgcatgaacaaaat-tacat |
13459501 |
T |
|
| Q |
301 |
ttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||| |||||||| |
|
|
| T |
13459502 |
ttttctcattcttgcgcaccaagcaacaaaaacataagcacatgagctgtttttagcaaggaaaacacaactatttttgtttgtgaagctcgaagtcttt |
13459601 |
T |
|
| Q |
401 |
cacctctataaatacaagcatacctcaatagtataaaaagggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaacaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13459602 |
cacctctataaatacaagcatacctcaatggtatagtgggggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaacaa |
13459701 |
T |
|
| Q |
501 |
agccttttttctttc |
515 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13459702 |
agccttttttctttc |
13459716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 34 - 332
Target Start/End: Complemental strand, 361775 - 361474
Alignment:
| Q |
34 |
catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtggcaaattttacaacttggacattcttgctct-c |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
361775 |
catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtggcaaattttacaacttggacactcttgctcttc |
361676 |
T |
|
| Q |
133 |
aaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaa--caagtggcctccaaacttctacggcttgcattcacgtgtca |
230 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
361675 |
aaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaaaacaagtggcctccaaacttctacagcttgcattcacgtgtcc |
361576 |
T |
|
| Q |
231 |
accttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacatttttctcattcttgcgcaccaagcaacaaa |
330 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||| ||| ||||||||||||||| || |||||||||||| |
|
|
| T |
361575 |
accttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcacgaacaaaattcacttttttctcattcttgtgctccaagcaacaaa |
361476 |
T |
|
| Q |
331 |
aa |
332 |
Q |
| |
|
|| |
|
|
| T |
361475 |
aa |
361474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 34 - 332
Target Start/End: Complemental strand, 347127 - 346826
Alignment:
| Q |
34 |
catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtggcaaattttacaacttggacattcttgctct-c |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
347127 |
catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtggcaaattttacaacttggacactcttgctcttc |
347028 |
T |
|
| Q |
133 |
aaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaa--caagtggcctccaaacttctacggcttgcattcacgtgtca |
230 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
347027 |
aaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaaaacaagtggcctccaaacttctacagcttgcattcacgtgtcc |
346928 |
T |
|
| Q |
231 |
accttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcacatttttctcattcttgcgcaccaagcaacaaa |
330 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| | ||||||| ||| ||||||||||||||| || |||||||||||| |
|
|
| T |
346927 |
accttttctctttgcaaattggaagttccagaacgttctagagaacgttctgcacgaacaaaattcacttttttctcattcttgtgctccaagcaacaaa |
346828 |
T |
|
| Q |
331 |
aa |
332 |
Q |
| |
|
|| |
|
|
| T |
346827 |
aa |
346826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 346417 - 346356
Alignment:
| Q |
441 |
ggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaacaaag |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
346417 |
ggcttacacacaaagaattgaatctctctcaaagtgaaggtgctcactactttcaaacaaag |
346356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 361065 - 361004
Alignment:
| Q |
441 |
ggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaacaaag |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
361065 |
ggcttacacacaaagaattgaatctctctcaaagtgaaggtgctcactactttcaaacaaag |
361004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 5600164 - 5600243
Alignment:
| Q |
311 |
cttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagct |
390 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| |||||||| | ||||| ||||||||||| ||| ||||| ||||| |
|
|
| T |
5600164 |
cttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgtcaagct |
5600243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 5609810 - 5609889
Alignment:
| Q |
311 |
cttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagct |
390 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| |||||||| | ||||| ||||||||||| ||| ||||| ||||| |
|
|
| T |
5609810 |
cttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgtcaagct |
5609889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 346550 - 346472
Alignment:
| Q |
311 |
cttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagc |
389 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| |||||||| | |||| ||||||||||| ||||||||| |||| |
|
|
| T |
346550 |
cttgcgctccaagctacaaaaacacaagcacatgggctgtttttggagaggacaacacagctgtatttgtctgtcaagc |
346472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 361198 - 361120
Alignment:
| Q |
311 |
cttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagc |
389 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||| |||||||| | |||| ||||||||||| ||||||||| |||| |
|
|
| T |
361198 |
cttgcgctccaagctacaaaaacacaagcacatgagctgtttttggagaggacaacacagctgtatttgtctgtcaagc |
361120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 1694282 - 1694204
Alignment:
| Q |
312 |
ttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagct |
390 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||||||| ||||| |||||| || | |||||| |||||||| |
|
|
| T |
1694282 |
ttgcgcgccaagcaacaaaaacataagcacatgagatatttttagaaaggacaacacatctttctttgtccgtgaagct |
1694204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 31151237 - 31151173
Alignment:
| Q |
311 |
cttgcgcaccaagcaacaaaaa-cataagcacatggactgtttttagcaaggaaaacacagctgt |
374 |
Q |
| |
|
||||||| |||||| ||||||| || |||||||||| |||||||| | ||||| ||||||||||| |
|
|
| T |
31151237 |
cttgcgcgccaagctacaaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgt |
31151173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 40817497 - 40817005
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40817497 |
tcatgttgccaccagatcacaactgtttttt--catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtg |
40817400 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactg----taaaaacaagtgg |
196 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| |||||||||||| |
|
|
| T |
40817399 |
gcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgtcaaacagctggaaaaaaaaacaagtgg |
40817300 |
T |
|
| Q |
197 |
cctccaaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgc |
296 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| | |
|
|
| T |
40817299 |
cctccaaacttctacagcttgcattcacgcgtccaccttttctctttgcaaattggaagttccagaacg------------ttctgcatgaacaaaattc |
40817212 |
T |
|
| Q |
297 |
acatttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagt |
396 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40817211 |
acttttttctcattcttgcgctccaagcaacaaaaacataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagt |
40817112 |
T |
|
| Q |
397 |
ctttcacctctataaatacaagcatacctcaatagtataa-aaagggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttca |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40817111 |
ctttcacctctataaatacaagcatacctcaatggtaaaagggggggcttacacacaaagaattgaatctctctcaaagtgaaggtgctcactactttca |
40817012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 1 - 502
Target Start/End: Original strand, 55789237 - 55789730
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
55789237 |
tcatgttgccaccagatcacaactgtttttt--catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattcttcatgtg |
55789334 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaaa----caagtgg |
196 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
55789335 |
gcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaaaaagcaagtgg |
55789434 |
T |
|
| Q |
197 |
cctccaaacttctacggcttgcattcacgtgtcaacc-ttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatg |
295 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||| |||||||||||| | ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
55789435 |
cctccaaacttctacagcttgcattcacgcgtccacctttttctctttgccaattggaagttccagaacg------------ttctgcatgaacaaaatt |
55789522 |
T |
|
| Q |
296 |
cacatttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaag |
395 |
Q |
| |
|
||| |||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
55789523 |
cacttttttctcattcttgcactccaagcaacaaaaacataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtaaaactccaag |
55789622 |
T |
|
| Q |
396 |
tctttcacctctataaatacaagcatacctcaatagtataaaaag-ggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttc |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
55789623 |
tctttcacctctataaatacaagcatacctcaatggtaaagggggaggcttacacacaaagaattgaatctctctcaaagtgaaggtgctcactactttc |
55789722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 18867775 - 18868277
Alignment:
| Q |
1 |
tcatgttgccaccagatcacaactgnnnnnnnncatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaataacattctccatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18867775 |
tcatgttgccaccagatcacaactgtttttt--catcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtc |
18867872 |
T |
|
| Q |
101 |
gcaaattttacaacttggacattcttgctctcaaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgt-aaaaacaagtggcct |
199 |
Q |
| |
|
| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||| |
|
|
| T |
18867873 |
gaaaattttgcaacttggacactctttctctcaaagcaacaaaggacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaaacaagtggcct |
18867972 |
T |
|
| Q |
200 |
ccaaacttctacggcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttctggagaacattctgcatggacaaaatgcac- |
298 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| || || ||||| | ||| |
|
|
| T |
18867973 |
ccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctg--------tc----tgaacaaagttcact |
18868060 |
T |
|
| Q |
299 |
atttttctcattcttgcgcaccaagcaacaaaaacataagcacatggactg-tttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18868061 |
ttttttctcattcttgcgcaccaagcaacaaaaacataagcacatgggctgttttttagcaaggaaaacacagctgtttttgtctgtgaagctccaagtc |
18868160 |
T |
|
| Q |
398 |
tttcacctctataaatacaagcatacctcaatagtataaaaagggcttacacac-aaagaattgaatctctctcaaagtgaatgtgctcactactttcaa |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18868161 |
tttcacctctataaatacaagcatacctcaatggtataagagaggcttacacacaaaagaattgaatctctctcaaagtgaaggtgctcactactttcaa |
18868260 |
T |
|
| Q |
497 |
acaaagccttttttctt |
513 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
18868261 |
acaaagctttttttctt |
18868277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 12391735 - 12391805
Alignment:
| Q |
440 |
gggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaaacaaagcctttttt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12391735 |
gggcttacacacaaagaattgaatctctctcaaagtgaatgtgctcactactttcaagcaaagcctttttt |
12391805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0508 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0508
Description:
Target: scaffold0508; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 133 - 276
Target Start/End: Original strand, 12249 - 12394
Alignment:
| Q |
133 |
aaagcaacaaaggacaacacttgtagctatcaaagaagtgtcaaacaactgtaaaa--acaagtggcctccaaacttctacggcttgcattcacgtgtca |
230 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12249 |
aaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaaaacaagtggcctccaaacttctacagcttgcattcacgtgtcc |
12348 |
T |
|
| Q |
231 |
accttttctctttgcaagttggaagttccagaacgttctggagaac |
276 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12349 |
accttttctctttgcaaattggaagttccagaacgttctggagaac |
12394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 1790587 - 1790666
Alignment:
| Q |
311 |
cttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagct |
390 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| |||||||| | ||||| ||||||||||| ||| ||||| ||||| |
|
|
| T |
1790587 |
cttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgtcaagct |
1790666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 1800081 - 1800160
Alignment:
| Q |
311 |
cttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagct |
390 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| |||||||| | ||||| ||||||||||| ||| ||||| ||||| |
|
|
| T |
1800081 |
cttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgtcaagct |
1800160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 22632004 - 22632066
Alignment:
| Q |
326 |
acaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagc |
389 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
22632004 |
acaaaaacacaagcacatgggctgttttt-gcaaggacaacacagctgtatttgtctgtcaagc |
22632066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 395
Target Start/End: Original strand, 23644 - 23728
Alignment:
| Q |
311 |
cttgcgcaccaagcaacaaaaacataagcacatggactgtttttagcaaggaaaacacagctgtttttgtctgtgaagctccaag |
395 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||| |||||||| | ||||| ||||||||||| ||||||||| ||||| |||| |
|
|
| T |
23644 |
cttgcgcgccaagctacaaaaacacttgcacatgggctgtttttggaaaggacaacacagctgtatttgtctgtcaagcttcaag |
23728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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