View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_43 (Length: 321)
Name: NF3184_high_43
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 24 - 309
Target Start/End: Original strand, 33861675 - 33861958
Alignment:
| Q |
24 |
ggttatgcaaagaaaatccttggcatgagaattacttgtgagttgtgacaatatgaatggtaaaattgtggttgtctcaacgaaattacattgagaaggt |
123 |
Q |
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| T |
33861675 |
ggttatgcaaagaaaatccttggcatgagaattacttgtgagttgtgacaatatgaatggtaaa-ttgtggttgtctcaacgcaattacattgagaaggt |
33861773 |
T |
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| Q |
124 |
gttatggactttacatgagaaaatacaaatgtatcagtactctactctatagtcatttcaaattgagttcagaataatgccctacaagtgaaaagatcaa |
223 |
Q |
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| T |
33861774 |
gttatggactttacatgagaaaatacaaatgtatcagtactctactctatagtcatttcaaattgagttcagaataatgccctacaagtgaaaagatcaa |
33861873 |
T |
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| Q |
224 |
gaagatatagagatggttccatatgcatccacaaagatagctttgtgtatgttaaggcatgcacaaggccgtatattgctcatatt |
309 |
Q |
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| T |
33861874 |
gaagatatagagatggttccatatgcatccac-aagatagttttgtgtatgttaaggcatgcacaaggccgtatattgctcatatt |
33861958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 24 - 309
Target Start/End: Complemental strand, 33919247 - 33918964
Alignment:
| Q |
24 |
ggttatgcaaagaaaatccttggcatgagaattacttgtgagttgtgacaatatgaatggtaaaattgtggttgtctcaacgaaattacattgagaaggt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
33919247 |
ggttatgcaaagaaaatccttggcatgagaattacttgtgagttgtgacaatatgaatggtaaa-ttgtggttgtctcaacgcaattacattgagaaggt |
33919149 |
T |
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| Q |
124 |
gttatggactttacatgagaaaatacaaatgtatcagtactctactctatagtcatttcaaattgagttcagaataatgccctacaagtgaaaagatcaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33919148 |
gttatggactttacatgagaaaatacaaatgtatcagtactctactctatagtcatttcaaattgagttcagaataatgccctacaagtgaaaagatcaa |
33919049 |
T |
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| Q |
224 |
gaagatatagagatggttccatatgcatccacaaagatagctttgtgtatgttaaggcatgcacaaggccgtatattgctcatatt |
309 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33919048 |
gaagatatagagatggttccatatgcatccac-aagatagttttgtgtatgttaaggcatgcacaaggccgtatattgctcatatt |
33918964 |
T |
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