View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_46 (Length: 308)
Name: NF3184_high_46
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 54617243 - 54616941
Alignment:
| Q |
1 |
ctaaccgctttattctgacttcttttctgtacaggatcgagatcctatgccatgatattaatgtccatattccacaccatatatccccgaaaataccgag |
100 |
Q |
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| T |
54617243 |
ctaaccgctatattctgacttcttttctgtacaggatcgagatcctatgccatgatattaatgtccatattccacaccatatatccccgaaaataccgag |
54617144 |
T |
|
| Q |
101 |
ctataatttacgagcagcccataaatccatccaagaaaattggggaaaggtaaagtcaataatgtcaatatcatattttatgcttcttcatgnnnnnnnt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
54617143 |
ctataatttacgagcagcccataaatccatccaagaaaattggggaaaggtaaagtcaataatgtcaatatc--attttatgcttcttcatgaaaaaaat |
54617046 |
T |
|
| Q |
201 |
gagggatcccatttttcttccactttttccagtcttaatattaagaaaagtaatgaaaatgttaaaacagtatttgctttgccaccaaaacatattcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
54617045 |
gagggatcccatttttcttccactttttccagtcttaatattaagaaaagtaatgaaaatgttaaaacagtatttgctttgccaccaaaacatacttttc |
54616946 |
T |
|
| Q |
301 |
gacat |
305 |
Q |
| |
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||||| |
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| T |
54616945 |
gacat |
54616941 |
T |
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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 25077934 - 25077820
Alignment:
| Q |
39 |
gagatcctatgccatgatattaatgtccatattccacaccatatatccccgaaaataccgagctataatttacgagcagcccataaatccatccaagaaa |
138 |
Q |
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|||||||| ||||||||||| |||||||||||||| || ||||||||||| || ||||| |||||||| ||||| |||||||| ||||| | ||||||| |
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| T |
25077934 |
gagatcctctgccatgatatcaatgtccatattcctcatcatatatccccaaagataccaagctataacttacgtgcagcccacaaatctctacaagaaa |
25077835 |
T |
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| Q |
139 |
attggggaaaggtaa |
153 |
Q |
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||||||||||||||| |
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| T |
25077834 |
attggggaaaggtaa |
25077820 |
T |
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