View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_47 (Length: 303)
Name: NF3184_high_47
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_47 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 29247354 - 29247636
Alignment:
| Q |
1 |
aaaaaacattggggctattagttattttaatttgctgttgcacttgcatatgtttttgtggtccacttttagtgtcaagtactacaactttaattagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29247354 |
aaaaaacattggggctattagttattttaatttgctgttgcacttgcatatgtttttgtggtccacttttagtgtcaagtactacaactttaattagaaa |
29247453 |
T |
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| Q |
101 |
ttgacatgatttttgtacttttatttgcatggcattctgaccaataactgttttatcagttaaataggctattgttagtgtactttagaagttccttaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29247454 |
ttgacatgatttttgtacttttatttgcatggcattctgaccaataactgttttatcagttgaataggctattgttagtgtactttagaagttccttaaa |
29247553 |
T |
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| Q |
201 |
atattgacttggtataagaagcatcctaaaacttatttctatatgcaactctttgctgggtgcatttttctaatgtatgtttt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29247554 |
atattgacttggtataagaagcatcctaaaacttatttctatatgcaactctttgctgggtgcatttttctaatgtatgtttt |
29247636 |
T |
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