View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_52 (Length: 277)
Name: NF3184_high_52
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 1900113 - 1900352
Alignment:
| Q |
20 |
gagcagagaatagatattatacccgaagacgagcaacttctccgatttgcatgccaatgacaccttcatcccatcctacacagacagatggttggaataa |
119 |
Q |
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| T |
1900113 |
gagcagagaatagatattatacccgaagacgagcaacttctccgatttgcatgccaatgacaccttcatcccatcctaaacagacagatggttggaataa |
1900212 |
T |
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| Q |
120 |
atcatatagtgaatgagttgtcaacacgtctaaatgtacattgcagcattatcatgtgtaaagaaactaggaataaagtaaaagtactaatattaacact |
219 |
Q |
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| T |
1900213 |
atcatatagtgaatgagttgtcaacacgtctaaatgtacattgcagcattatcatgtgtaaagaaactaggaataaagtaaaagtactaatattaacact |
1900312 |
T |
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| Q |
220 |
aattagttatcataataatagtaatgtacaagtataattt |
259 |
Q |
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| T |
1900313 |
aattagttatcataataataataatgtacaagtataattt |
1900352 |
T |
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